G38909


Basic Information

Item Value
gene id G38909
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3974353 ~ 3976596 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48496
CCGATTCTTTTGAGAAAcaagtttttctgtttttatcacACAATCCTTTctgttactactactagtaTTCTGTTCCCCACACTTTAtcatcattcaaaatgtatacaaatacaaatctatatatctatactATATATTGCTTGAGTCCTACactggggtgaatggcctcaaAAGGTACGTGAAAGCTTCAGGCATTATATGAAAAGTTCAGAGTTTCAATTTTAATTGGTAAAGATGCATTAATCAAAAATTATCCGGATCTAATTTTAGCTTACACCTTTGTGGTTTTTGTTCTGAAATCCAATTAATTTTATACTGGtaaatcctaaaataaaatgaaatgttgattcattttagtttaatgcAACAATACTAATTCATGATTCATGATTCATTAATTTTGGATGGGTTTACAatcattgatttaaaagttaaaaaaaacagttgttaGAGCTGCTTTAGCAGTAATAGGGTAATTCAgtaatcattttgaaaatattttttttccatggaCGTCTTTCATATTTATTGGGCTAGAAAACACTTAGGCACAATGTTTGATGATTACTTGAAACTTGTAGGAATATATAATGGTTTAATTCCAAAAATTTTGTGTAAAAGTGGCATCACCTAGTGATTTGATATCTGTGGTATATCCATTTAGATGTTATGGTTTGTATGACTTGGTGGTTCAAAATAATTTGTAGTTTGAGTAGAACAGGTGTTgctgaattattttttcaacaaataaaatcaggaaAACATACTGAGTAGTAAGTATGTAAATTAAGATGCGTTATTTACTAAAGAACAAGAAAATACCCtggagataaaaatatatacataacaaaCATGGAAAAACATTTCATATACACTTGCCAGTAGCTTAATGATCCAAAAATCTGATCAAGCTTTTTTTCTTAGATGATTTGTAACAATCAGCTTACAAACTTCAAAGAAATTTGATCATATACGCTAGTCAATAAATCGTTAGTATAGTgtgcaaaactaaacaaaatatatgaacCCAGTAAAttaatggtttattattttatttacccaGTTGCCAGAAATTGCTCATTGAGGTGTTTCAAATTTTAGTGCAGACCTGGTGGTAAAACTATTCCTGAACTCTGGTAATTGCATTCCCAAAGTTGACCTGCCCAATACAGGGGTTTATTGAGAATAAGTGAATGCCTTAAATAAGGATGGCAACTGCAGGCCTCAAAGGTCCCTAGGCtcctctggttttcattccataccagatcataattatttatttggataGGTAAATCACCCATCACATAATAGTTTTAATCAGTTGCTAATTGAAAGGTGCATCTAAACCCTGTAGGAATCTGATCCTTAAGGACCAGAGTTGCCCATCCCTGTCCTAGGGATTAGGGGTAATTTAAATAGCCCACTGAACTGTTTATGGTGAAGATAATGTATTTTACCTATGGCATACCCAGGGGTATGGAGATTAATACATTGGGTAATGTTATAGTTTGGGAAGCTGACAAAGCACTTGGTGGGTGGGTTATTCTGTAACGGTGAATGAATGTGGACTGTGTCAATTCACCTTTTGGATTTCAAGGCAACAGCACTGCTTCTGTTCATAACAGGGAAAGAAACCTAAAATGTTGGCTGCTGAGCTTCCTTTTTGTGGAGGCTAATTCAAAAactcatgtttgtaaatatGGCAACTGTAGCAACTCCACAAGGAAAAGACGAATGACCTGAAGACAGGGggcaaaagcaagaaaaaaaaaactaaacaaaagcaaGGCATGGCCAAAAACAAAGATGGACCTCTCACTGTTTTGTCATCATGAAAAGGAGGAGGACAGCCAATAGCCATCACCCTTCTTACTCCAGAGCCAATGGCTTAAACTGTTCTTACTGTGTAGGATGACCAAGAAAATGGTGGAAAGGTTTTGGTTATGACTTATTTTGtactgtttcttttctttattctgGGTTGGGGATGAGAACAGAGGATACAGGATACAGCCAATGGCaagacattttgtttccttctatAGTACAAGCATGAGATTAACCAACAGCAGACGGAGAGTCTTGCTCAACCCAATAGCAAATGGAgttcactttttctttcttttttttttattgaaaaaccAGGAGTAAAAACCAGTGGTATAGCCTCATGTTTTGAGGAGCCAATcacattgttgtattttataacattgcaaaataaataactgctaAAGTTTCCTTGTC

Function

GO:

id name namespace
GO:0048731 system development biological_process

KEGG:

id description
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
TU48496 True 2244 lncRNA 0.34 1 3974353 3976596

Neighbor

gene id symbol gene type direction distance location
AMCG00012676 srpk2,LOC107552422 coding downstream 110929 3862048 ~ 3863424 (-)
AMCG00012673 LOC106910051 coding downstream 201366 3757095 ~ 3772987 (-)
AMCG00012671 NA coding downstream 219358 3738744 ~ 3754995 (-)
AMCG00012672 NA coding downstream 244707 3727446 ~ 3729646 (-)
AMCG00012674 mapk11,LOC108442323,LOC105020226,LOC103035641,LOC106609456,LOC107725929,LOC100700904,LOC108279456 coding downstream 252953 3678679 ~ 3721400 (-)
AMCG00012677 usf2,LOC101066260 coding upstream 4194 3980790 ~ 3990090 (-)
AMCG00012678 usf2,LOC105007924 coding upstream 38576 4015172 ~ 4024403 (-)
AMCG00012682 NA coding upstream 327399 4303995 ~ 4308720 (-)
AMCG00012683 NA coding upstream 372511 4349107 ~ 4367364 (-)
AMCG00012684 NA coding upstream 403277 4379873 ~ 4381284 (-)
G38842 NA non-coding downstream 190303 3783804 ~ 3784050 (-)
G38841 NA non-coding downstream 190962 3783160 ~ 3783391 (-)
G38791 NA non-coding downstream 335487 3554385 ~ 3638866 (-)
G38792 NA non-coding downstream 412503 3506837 ~ 3561850 (-)
G38743 NA non-coding downstream 543017 3429936 ~ 3431336 (-)
G38910 NA non-coding upstream 60843 4037439 ~ 4096741 (-)
G38965 NA non-coding upstream 150411 4127007 ~ 4517632 (-)
G39017 NA non-coding upstream 350487 4327083 ~ 4329635 (-)
G39160 NA non-coding upstream 809098 4785694 ~ 4786528 (-)
G39174 NA non-coding upstream 937407 4914003 ~ 4916594 (-)
G38490 NA other downstream 1790190 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 2157153 1578955 ~ 1817200 (-)
G38458 NA other downstream 2197132 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 3434762 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 2075768 6052364 ~ 6063817 (-)
G39487 NA other upstream 2479125 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 2661884 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 3914893 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 5135845 9112441 ~ 9152405 (-)

Expression


Co-expression Network