G39017


Basic Information

Item Value
gene id G39017
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4327083 ~ 4329635 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48618
GGGAAGTGCAGGAAGTGGCGGCTGTAGAGTGTCAAAGATGTTACAgagaagaatgaaaacaaacaggattTCCAGTATTTGACGcgacaggtttttttttaacgtCAGTCTCCCCAGTGTGGAGGGTGGTGTTCTGAGTTAGATCCTGGATTAGCTGCTGGAGCTGCTTCATTGTTGCCAGTTCCCTTTGTTCTTCATACTGCTCCACTGTCAACTGCTGACAGAATGTGAACGCTGACaacgagaaaaaaaatgaaatatatatattataaaagcaaGATAGGTCACCGAAAGAGGTTTCAGAAATCTACTTTTGCCATAGTGCTAAGCCACTATTACAGTATAAATTCAGCTTCATTTTCAACCCACTTTCAAACTTAATTCCCTACATGTGGTGACTGATTAAGAACTGTTAAAAACAGGTCATTTGACTCCCTGTCATAATAATGACAATTAAGAATGGAGgtagaatgaaaaccagaattCCCCTTCAACCTCAAGGACTGGAACTGCCTACACCTggttaaatcaaatataatctATCTTTAGAGACACTGGTGTAAAGAGTATTTTTTGCTTCATATTATACATGGAAGGTATCAGAAACTGAACTTCGATACTGTATGCATCAGCATAGCAGGGTGAAATTCTACTGGAGCACTGGAAGTGAAGAAAGAAGACCTACCAGCTGTGGTATCTGGATCTCTTCCTTGTTGTAAAGTCTGAAGCTGCTTGGTAACTGTCTCTATCAGTGATACTGGAGTCTATTTCaatgaatattaattttaaaaatggttaGATTTATGCATGAAGTAAATTTGATTTATCATTAAgtgcagctttcaaaaacaatgtatattgtatagttaggtccataaatatttggacagtgacaaaattgtcatcattttggctctttacgtcaccacaatggatttgaaaggaaactatgtgctttaagtgtagactttcatctttaatttgagggtagttacatccaaattgggtgatcggagtaggaattacacacatttttatatgaccaatgagttttgaagcatttggctgaatctgagcagataatatagccctaaacacttcagaattcatcctgttGCTTTTGTAAGCAGTCatataatcaataaatacaagggaaccagttcccttggcagccatacatgcccatgccataaaaCTACCTCTGCCATGCTTCGGATCAttagcagttccttcccttctccatattcttctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48618 True 1253 lncRNA 0.38 2 4327083 4329635

Neighbor

gene id symbol gene type direction distance location
AMCG00012682 NA coding downstream 18363 4303995 ~ 4308720 (-)
AMCG00012678 usf2,LOC105007924 coding downstream 302680 4015172 ~ 4024403 (-)
AMCG00012677 usf2,LOC101066260 coding downstream 336993 3980790 ~ 3990090 (-)
AMCG00012676 srpk2,LOC107552422 coding downstream 463659 3862048 ~ 3863424 (-)
AMCG00012673 LOC106910051 coding downstream 554096 3757095 ~ 3772987 (-)
AMCG00012683 NA coding upstream 19472 4349107 ~ 4367364 (-)
AMCG00012684 NA coding upstream 50238 4379873 ~ 4381284 (-)
AMCG00012688 ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950 coding upstream 177992 4507627 ~ 4508220 (-)
AMCG00012690 NA coding upstream 294280 4623915 ~ 4642672 (-)
AMCG00012691 NA coding upstream 355281 4684916 ~ 4696006 (-)
G38910 NA non-coding downstream 230342 4037439 ~ 4096741 (-)
G38909 NA non-coding downstream 350487 3974353 ~ 3976596 (-)
G38842 NA non-coding downstream 543033 3783804 ~ 3784050 (-)
G38841 NA non-coding downstream 543692 3783160 ~ 3783391 (-)
G38791 NA non-coding downstream 688217 3554385 ~ 3638866 (-)
G39160 NA non-coding upstream 456059 4785694 ~ 4786528 (-)
G39174 NA non-coding upstream 584368 4914003 ~ 4916594 (-)
G39175 LOC106613431,LOC106584099,LOC106573797,LOC106609167 non-coding upstream 600153 4929788 ~ 4930753 (-)
G39189 NA non-coding upstream 601609 4931244 ~ 5006607 (-)
G39231 med21,LOC102798687 non-coding upstream 876969 5206604 ~ 5209859 (-)
G38490 NA other downstream 2142920 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 2509883 1578955 ~ 1817200 (-)
G38458 NA other downstream 2549862 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 3787492 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 1722729 6052364 ~ 6063817 (-)
G39487 NA other upstream 2126086 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 2308845 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 3561854 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 4782806 9112441 ~ 9152405 (-)

Expression


Co-expression Network