G39160


Basic Information

Item Value
gene id G39160
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4785694 ~ 4786528 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48782
tcagcaggggatcaaatacttttttccctcactgtatatatattattttatataaatattctgAAGCAGTCATCTCCTTGACTTCTGCATCTTAACTGTAATATCTTTGTCAAGATGTTTTTCTGGTTTGAGTAgattttgcatttgtaaatcTATCACTAACATATaagtcagaaaaacaaaaaaaaagatatttacAATACTTGAAAACATATAATGCagattataatatacatatactgGATTTTCCGATTCAGAGTTGCACGCttacatatgtacatatataacaaGGCCTTATGAACAGTGAAAGGAGATGTTTTCTAATATTTCTAATTCAATGTAGGTTGGCAGTTACACTACCCATAACAATAACTCTATTATCtactcaaaataaaaagttgtaaatgcatatgtgtgtattatttacAGATCTCttgataatatattaaatacataaatcagacTGACAGTGAATATTTGTTGTTGCTATTTGTACGAGACTGTTATGAGAGCAGCAGggtttttcttaattaaatcgGTACAGAATATCAGAATatcttcttttgttgttgttgtttcgtttagtttttttctcaaatgaaaGGCTTTTCTTGGattgtttctttattgattCACTTTTCCTCATTGTATTTGTGTAGAAAAATGACTAGAACAATGTTAACCCACCTTGGACTTGTAAAGCATGCATTTTAACTGAATTATGTGGATTTGTAATTTAagctaaatgtaataaatataccATGTATAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48782 True 772 lncRNA 0.29 2 4785694 4786528

Neighbor

gene id symbol gene type direction distance location
AMCG00012689 LOC107744925,LOC107664854,LOC107588513,LOC107590206,LOC107695881,LOC107725616 coding downstream 12736 4760685 ~ 4772958 (-)
AMCG00012691 NA coding downstream 89688 4684916 ~ 4696006 (-)
AMCG00012690 NA coding downstream 143022 4623915 ~ 4642672 (-)
AMCG00012688 ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950 coding downstream 277474 4507627 ~ 4508220 (-)
AMCG00012684 NA coding downstream 404410 4379873 ~ 4381284 (-)
AMCG00012693 mybpc1 coding upstream 1006 4787534 ~ 4827776 (-)
AMCG00012692 NA coding upstream 53699 4840227 ~ 4846796 (-)
AMCG00012694 utp20,LOC107576235 coding upstream 78341 4864869 ~ 4890898 (-)
AMCG00012705 LOC106609519,LOC106576405 coding upstream 147981 4934509 ~ 4979371 (-)
AMCG00012704 NA coding upstream 210036 4996564 ~ 5005697 (-)
G38965 NA non-coding downstream 268062 4127007 ~ 4517632 (-)
G39017 NA non-coding downstream 456059 4327083 ~ 4329635 (-)
G38910 NA non-coding downstream 688953 4037439 ~ 4096741 (-)
G38909 NA non-coding downstream 809098 3974353 ~ 3976596 (-)
G38842 NA non-coding downstream 1001644 3783804 ~ 3784050 (-)
G39174 NA non-coding upstream 127475 4914003 ~ 4916594 (-)
G39175 LOC106613431,LOC106584099,LOC106573797,LOC106609167 non-coding upstream 143260 4929788 ~ 4930753 (-)
G39189 NA non-coding upstream 144716 4931244 ~ 5006607 (-)
G39231 med21,LOC102798687 non-coding upstream 420076 5206604 ~ 5209859 (-)
G39245 NA non-coding upstream 434243 5220771 ~ 5282686 (-)
G38490 NA other downstream 2601531 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 2968494 1578955 ~ 1817200 (-)
G38458 NA other downstream 3008473 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 4246103 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 1265836 6052364 ~ 6063817 (-)
G39487 NA other upstream 1669193 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 1851952 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 3104961 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 4325913 9112441 ~ 9152405 (-)

Expression


Co-expression Network