G39175 (LOC106613431,LOC106584099,LOC106573797,LOC106609167)


Basic Information

Item Value
gene id G39175
gene name LOC106613431,LOC106584099,LOC106573797,LOC106609167
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4929788 ~ 4930753 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48809
aaagattcaacaactaagacataaactgaataagtttcagacatgtgactaacagaaatggaataatgtgtccctgaacaaagggggggtcaagATCAAAAGTAACattcagtatctggtgtggccaccagctgcatcaagtactgcagtgcatctcctcctcatggactgcaccagatttgccagttcttgctgtgagatgttaccccactcttccaccaaggcacttgcaagttcccggacatttctggggggaatggcccttgCCCtaaccctccgatccaacaggtcccagacgtgctcaatgggattgagatccgggctcttcgctggccatgggagaacactgacattcctgtcttgcaggaaatcacatccagcgaaggtgggtttgtgcccataggcaaCGCTGTTGccagtgatgtctggtaaggacctgccttacaacaggcttACAAGCCcacagtccagcctctctcagcctattgcagACAGTCTGAgtactgatggagggattgtgcgttcctggtttaactcgggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatattcggatgtaccgatcctgtgcaggtgttgttacacgtggtctgccactgcgaggacgatcagctgtccttcctgtctccctgtaatGCTGTCTTAGttgtctcacagtacggacattgcaatttattgccctggccataTCTgtagtcctcatgcctccttgcagctgAGCTcacacagatgagcagggaccctgggcatctttcttttggtgtttttcagagtcattagaaaggtctctttagtgtcctaagtttttaaaactgtgaccttaattgcctaccgtctgtaagctgttctGCTGTCTGTAAACGactgttccacaggtgcatgtttattaattgtttatggttcattgaacaagcatggaaaacattgtttaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106613431, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48809 True 966 lncRNA 0.48 1 4929788 4930753

Neighbor

gene id symbol gene type direction distance location
AMCG00012694 utp20,LOC107576235 coding downstream 38890 4864869 ~ 4890898 (-)
AMCG00012692 NA coding downstream 82992 4840227 ~ 4846796 (-)
AMCG00012693 mybpc1 coding downstream 102012 4787534 ~ 4827776 (-)
AMCG00012689 LOC107744925,LOC107664854,LOC107588513,LOC107590206,LOC107695881,LOC107725616 coding downstream 156830 4760685 ~ 4772958 (-)
AMCG00012691 NA coding downstream 233782 4684916 ~ 4696006 (-)
AMCG00012705 LOC106609519,LOC106576405 coding upstream 3756 4934509 ~ 4979371 (-)
AMCG00012704 NA coding upstream 65811 4996564 ~ 5005697 (-)
AMCG00012709 gas2l3 coding upstream 142132 5072885 ~ 5094228 (-)
AMCG00012708 NA coding upstream 166568 5097321 ~ 5122506 (-)
AMCG00012707 slc17a8,LOC107553956,LOC107686235,LOC107672209 coding upstream 222522 5153275 ~ 5171222 (-)
G39174 NA non-coding downstream 13194 4914003 ~ 4916594 (-)
G39160 NA non-coding downstream 143260 4785694 ~ 4786528 (-)
G38965 NA non-coding downstream 412156 4127007 ~ 4517632 (-)
G39017 NA non-coding downstream 600153 4327083 ~ 4329635 (-)
G38910 NA non-coding downstream 833047 4037439 ~ 4096741 (-)
G39189 NA non-coding upstream 491 4931244 ~ 5006607 (-)
G39231 med21,LOC102798687 non-coding upstream 275851 5206604 ~ 5209859 (-)
G39245 NA non-coding upstream 290018 5220771 ~ 5282686 (-)
G39246 LOC100846954 non-coding upstream 303409 5234162 ~ 5250471 (-)
G39281 NA non-coding upstream 457440 5388193 ~ 5408760 (-)
G38490 NA other downstream 2745625 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 3112588 1578955 ~ 1817200 (-)
G38458 NA other downstream 3152567 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 4390197 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 1121611 6052364 ~ 6063817 (-)
G39487 NA other upstream 1524968 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 1707727 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 2960736 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 4181688 9112441 ~ 9152405 (-)

Expression


Co-expression Network