G39193


Basic Information

Item Value
gene id G39193
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5037547 ~ 5074126 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48836
cacacacacacacacacacacacacacacacacacacacacacgcatacatacacacatacacacacacacaattttatatacatacatatacacccACACGTATACATTGTACACCCAGACTACACTGTTTAATTCAGTAAGAACCCTgatatgttaaatacatttaaagaggaaaactgtatattaaaattTTCATTTATTAAGTTAGACCTGTGTGACTACCCAGCTGTgtgaaagcaaaacattataAGTAAAGCTTTAAAATTGTTCCGTAACAGCATTACTAAACTGATAAAGAAAAAGCGTCATGATTTTCCAGAATCAATGCTATATTGAATGTCTCTTCacactaaaaataaagtaaatagcTTAAAATGTTATCAAAACTGCAAATTctacaaagacaaaatattcTGATATGTTTGGTACTACAGATTGATTGTTTAATAAGCTATTTTCACAATGTTGAGaaactaatacttgtattacaTTACTAAGTAGTATTTACAACCTTTCGCAAGACTTGGTAAtaagcaacttttttttttttttgcctgatTCAGGAACTATTTGACCAATACACAAATGTGCAGCAAATATGCAAAAGGGAACTGCATTAACACGAATTACAGAGGACATTTAGTAAATGTATGCTCTTCAATGTATGTTAAGTTTAGCTCAAAAGCTAAACGGCTTGTATTCTTGGAGTGGAGTAAAGGCTATGAcatgatggggaaaaaaaaagattgcattgGTCTTAAAAGCCTAGAATCTAGCACAACAATTTAGAGAAGTTTATGCCAAACACCTTTCCATTTCTTTAGCATGGTAAGAATTCAAGCaacaatataaatgaaaatattcctATTACTGCTTTGGTACAAATAATTcagacaatgaaaaacaaaactaggcTGTAACAATGGATCTCTGCCAGAATCCAAGTGAAGCACAGTTCAAAGCCTTTAGTGTTttgggttataaaaataaaataaaaaaaataaagttcagtaATGGGTTAGAAAAGTAACTGATTATCTAAccgtgtaaaaacaaaaacattaaaaaagaaaagccattcTGCAGGACTGAGACATTGATTATTGCGAACACCAGATGGCAAAAAAAGCTTAACCGGATtagaactgaactgaatcagcatatggtctttaaaaaaaaaacaatacaaaacttgaacaccttaattaaaaaacaaatatggacTTTGGTAAAACTTTTCATAATTGGTGGGGAATTATGGATTTGATAATTTTGCTCACCGTCAAAACATTTAACTTGCAGGACCCCTGTATCCAGCTTGAATAGAACAGATAACACTAATTTCTGCAGAATGTGAATGTTGAAAGGACTAAGGAATTATGCAAGGTTAAACACTTGATTTTGAAATGAGTCAAACCGAGGCATTCAGCAAACAAATGACATCAGGGTTCAATCTTGGTGGCCCAGTTCCTCAATATGGAAAAGGACAAATTGgcctattttaaacaaaaacctttCCTTTTCATACATGGTCATCATTTTAATGCACACAGCTGTGTACAGGTACTGATCAAGTTTACCGTTGGCAAAACCATAAGTAAATAAAAGGTAATCTTCCTGACTAGATGCTtatgttaaaggaaaaaaaggtcAGAAATGCCAAGAGCACTATCAGTGAGCCAACCAGCTGCATTTTTAACTGAACCCTGAGTACCCCAACGTAATGAAAGATCTGTGGTTCAATTTCACAATCTCTCATGTGGCTTTTCAACAGGATCTTAAAATGGGTATGTTGTTTAGCAGAGGTATTTTTAAGCTTACACATTAAAATCTGGAAAATCAGAGTCAGTTGTCGGCATCAGATGGTTTAGTATCTTGCAGACTTATTTTGCTACTTCTTTCCATTCATTACAAAGTAAGGATCTTCATCTTTGGTCTTCGCTTCAGGAATCTTTCTTCCCCGAGGAGCAATCCTAGTAGAAGAAACGGGGGTCTTTGTATTTGAAAGGGGATTTTTTGTGGTGGGGGCTTGAGCTTTACCAGATTTCTGCGAAGCCTTCACAGGAGCCTGCATCTGGCTTGCTGGCTGTGCTCTGCAGGCTGAAATTTCGGGAGTTTTGGCTGTTTGGGAAATCTTGACAACAGACAAGGGACACCTCATTGTGCTTGTGGAAGACGCAGGAGCGCTTTTTGAagttttggtattttttgcAATTGTCCtagaaggagggagaggaggttGGAGTTTGATTTGTGAGGTTTTACGGCCCGTATCAGTCCCATGGATCAGTTTAGCTGTACGTTTACTATTAGCCTCCAATGCAGGGGGGTCTTTCTTGGAGTGCGGAGTCATGTGGCCTATAGTGGGAGACGGTCTTGGACTCCAACTGCTCTTGGGGGATGGAGTCACCGGTTTGACTGGGGTTCGGACTCTAAGTGAAGGGGCATTCTGTTCCAGCGTTTTGACTCCTTGAGTGTTGAGCCGAAGGCTTGCTGCAGGAGAACCAGGGCGCCTCTGGGAAAGGCGTTTTTTCTGAGGACACACCAGCGttgcagcaggagcaggagatTTCCGGGGCTGCTCTGCTGCCTTTTTAGTAATCACTCTCTGAATGGATGCAAATGAACCAATCGGCTCCGAACAAACCGATAACGAGGAAGGTGTCGGACAGCATCTGGTCAGCGAGGGAGTGAGTTTAGAAGACTTGGAAGACGGCTCGGAGAAAACGGACGGGCTCCTTGCCAAGGGGGGGGCACAACGCAAGGAGGGATTTAGCCGGGACACCACTGGAGAATTCGTCAGGGGCGACTGAGGGCGTCTAGATTTGTTCTCTAGACTTTTAGTCAGTGTTAAGGGGGTCTTGGGGGAAGGTCGAGAGCTTTTTGCTTTTTGGAGTTGGCCTGCAGCTAACATGGAGGTCAACGGAGACGTCTTGGCGGGAATCTGGTGCTTTTTTACCAGTCGAGTAGTGCTGGTAGTAGACTGAGCAGCCATTGCTGACGTGGGAGCTCGGTTTGTCGTGAGCTTGGGGACTGGGGAAGGAGACTTGGGTTTGGAGGGGGCGGAGGGCAAATGCACCGCCGAGAAAGGGTTCATGGCAGGAGGGTGAGGAGACCGGCCAGGTGAAGCTGGGATATTGAGCAGAGGGTTAGACACTCCCTTCTGAAAGGCCAGGATCTTCTGCTCAAGCATGCTGAACTGTAGCACTCGGCAGGGGTCGTACTTCAGCAAGAAACCCTGAAGCGTGTCCCAGCCGCCGCCAACGCGCACCATCACATGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48836 True 3286 lncRNA 0.42 2 5037547 5074126

Neighbor

gene id symbol gene type direction distance location
AMCG00012702 NA coding upstream 133964 4895052 ~ 4903583 (+)
AMCG00012696 arl1 coding upstream 171780 4860726 ~ 4865767 (+)
AMCG00012701 NA coding upstream 276518 4757241 ~ 4761029 (+)
AMCG00012698 gnptab,LOC107593561,LOC107735372,LOC107590211 coding upstream 289243 4721259 ~ 4748304 (+)
AMCG00012703 NA coding upstream 352123 4677618 ~ 4685424 (+)
AMCG00012726 fgfr1op2 coding downstream 108176 5182302 ~ 5189320 (+)
AMCG00012724 stk38l coding downstream 161040 5235166 ~ 5243203 (+)
AMCG00012727 NA coding downstream 190147 5264273 ~ 5278114 (+)
AMCG00012719 si:ch211-245j22.3,LOC105895582,LOC104937698,LOC106573300,LOC107749310 coding downstream 230935 5305061 ~ 5312518 (+)
AMCG00012733 NA coding downstream 433543 5507669 ~ 5508001 (+)
G39186 NA non-coding upstream 81680 4949240 ~ 4955867 (+)
G38964 NA non-coding upstream 519916 4517136 ~ 4517631 (+)
G38886 NA non-coding upstream 1060930 3974365 ~ 3976617 (+)
G38882 NA non-coding upstream 1074974 3962363 ~ 3962573 (+)
G38845 LOC103376870 non-coding upstream 1155129 3795081 ~ 3882418 (+)
G39279 NA non-coding downstream 362707 5436833 ~ 5437162 (+)
G39321 LOC100846954 non-coding downstream 573648 5647774 ~ 5648107 (+)
G39382 NA non-coding downstream 848488 5922614 ~ 5923023 (+)
G39445 NA non-coding downstream 1210808 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 1438522 6512648 ~ 6536393 (+)
G38954 NA other upstream 663973 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 785953 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 3456159 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 4198281 778908 ~ 839266 (+)
G39297 NA other downstream 478291 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 733720 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 979022 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 1402123 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 2270324 7344450 ~ 7381559 (+)

Expression


Co-expression Network