G39245


Basic Information

Item Value
gene id G39245
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5220771 ~ 5282686 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48922
aCGGCTTTGAGAAATGCACCATCTCAGTCACAGTCGTCCtgtcaacagcagcagcaacaatgTTACAATAAAGGTTTAAAGTAAGTGCTTcattatgggaaaaaaaaaataataataaaaaaatcaagggGCCAGCGAGGACTGGCCTGCCTTTGTATGGACTCCACTTCTTTCAGCTTCTTGTGGGTCTTTGGAAAACTGGCCAGATTGATGGAGGCTATAACAACAAAGCGATTACTAAGGGACAAAACACACTGGTCTGGCTACAAATAAACAGGGTctacgtaaaaaaaaaaaaaaaaaaaaatacaggaacGGGATTCTTAAATTGAACCACTATAAAATCTGTTGTACAGCACACCAATATCCATATATTTCTTTTTGTATGGGCTGGTTTTGGCCTATATTCTTCACATGATATCCTAAAACACAATTTGATAAGGCAAATTATCCATAAGTTTccataattagaaaaaaaaaagaaaaaaccaaACCCCCAcattttgagaaagaaaaaaaaagtttaaaatgctaCATGCAAAGAttaataactaaaaacaaatgcaatacaaatacagattatattaataaaacagttcCAGGCTAATGTTtgctacttaaaaaaaaaaaattataataataatctaaaattaAAGCACCTTACTTACAGCACTGCACTCTccccaaaatgaaaaacatattcgcATTGAGGACCTTCTCATCACAATCCAGAGCACATCCATTTACAGTACgtcaataaaaaatgaaatctgctCTCTCATGGGCAACTTCCTATAGTTATGGCACATTCAGACTGCAGATCTGATTTCACTATTTGTGTTGCAAAAGGACAATTATTATGTGATTTCTCTTAAGAGAGTTTTCCTCCCAATCTATATGATAATCAGTCACACACAAGTAGCTGTCTTGGGTCTTTGTGTCATTTCAAGTTgccattaaaaattaaataaatatagaaccACAATTTGCCtcttgaaattatattattccACAGGCATCGGATACTGGTGAAATAATGAATATCCAAGAAACAGAACGTTTGGCTCAGTCCTTGGCTGGTCTTTTTCAGTACTacatattcacttttttttgtccTCCGTGGGTTTTGTGCGCATGTGCTTGTGCTAAATTCACAACTTGGAAAAGAATAAAAGTATTCCAGCCTAGTCCTGCACCCTTCTAGGATTCTTGTAAACTGGTGCTTCAACCTTCAGCTGTAATCTACACAGAAATGTAGCAAGGCACATCTGAAATATAGGCAGTCTTTCATTTggtttgttgcttttgttttagaaGCCTTGTGCCAGAGGGCCCATGAAATTATGGGCCTCAATTATTTACTGTAGTGCAGTTTCCACATATTTACCATGATCTTTTCCAGAACAGAGCAGCTGAAATTTAAAAGCAACGTCAGTGCCACATGGAAAAGATTGGGAAAAAAATTCTCATCTTCCAAAATACAACAGGAAGAAGTGCAACTGACCTTCCAGGAATGATGGCTTTGAAGGAATGTACTAGAGACCCGACTATGATTACATCACCATAATGCACTGTTAACATGTAGAATTTCATTCAGTTTCACTTACACAATGCAATGCTCTCCACGAATCACAAGCCTGGGTCGTACTTCCAAGATGAAAGACTCATGGAGGTCCACATAGAAAAGTACGTTAACTCAGAAATTGATTTGTTCATAGTTTCTAACAGCACTATTCTCTTCTCACATTAAATGTTACCTCTGCGTGAGGCATTGAGGAATTTGCTCCAAAGTGTACAAACACAAAGGAAAGACTGTCATGCTATCTGCCAGATTAGCTCCTACAAGCTGAAGAATACTGACCAAAAGGCAAAAGAAAACCAACACCTGCTCACTAGCCTTTTAGCCCAGTTCTGCTcctaaaaaggaaaacattataCCTATAATGCCTCTTAAATAATCACAGTGTGtttcagaatataaataaagtcAAAAATGGATAGGGAAGGTGAATCTTTGTGGGTACTCCTGGCTGGAAAAGTGCAGGTTACTAGAGCCAAGAAAGCACCTTGCTAGAAGATGGAGCCAGATCTGTTTGCTCTCAACGGCCAGCACACCCAACTAGAATATACAGTACAAAGTCCAAAACTCTACAACCTCCTTCtgcaaaataagaataaataatgaaaataaaaaagacctaTAAATATGCACTGTTCAAAAAATGTCTAGATGTAAGACAACTTGTAACCCATTTGTAAGTTAGACCCAGACCTGCAGTACGAATGTATGCAAAACTTCCAAGTTCTtcacagatatatatacactcacctaaaggatgattaggaacaccatactaatactgtgttNNNNNccctttcgccttcagaactgccttaattctac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48922 True 2404 lncRNA 0.37 2 5220771 5282686

Neighbor

gene id symbol gene type direction distance location
AMCG00012710 NA coding downstream 17606 5190953 ~ 5203165 (-)
AMCG00012707 slc17a8,LOC107553956,LOC107686235,LOC107672209 coding downstream 49549 5153275 ~ 5171222 (-)
AMCG00012708 NA coding downstream 98265 5097321 ~ 5122506 (-)
AMCG00012709 gas2l3 coding downstream 126543 5072885 ~ 5094228 (-)
AMCG00012704 NA coding downstream 215074 4996564 ~ 5005697 (-)
AMCG00012711 NA coding upstream 5342 5288028 ~ 5303893 (-)
AMCG00012712 syt10,LOC106609485 coding upstream 129520 5412206 ~ 5414340 (-)
AMCG00012713 syt10 coding upstream 142015 5424701 ~ 5436981 (-)
AMCG00012714 LOC105020308,LOC104958207,LOC100694258,LOC106609412 coding upstream 351779 5634465 ~ 5639532 (-)
AMCG00012716 NA coding upstream 509352 5792038 ~ 5805393 (-)
G39231 med21,LOC102798687 non-coding downstream 10912 5206604 ~ 5209859 (-)
G39189 NA non-coding downstream 214164 4931244 ~ 5006607 (-)
G39175 LOC106613431,LOC106584099,LOC106573797,LOC106609167 non-coding downstream 290018 4929788 ~ 4930753 (-)
G39174 NA non-coding downstream 304177 4914003 ~ 4916594 (-)
G39160 NA non-coding downstream 434243 4785694 ~ 4786528 (-)
G39281 NA non-coding upstream 105507 5388193 ~ 5408760 (-)
G39295 NA non-coding upstream 263148 5545834 ~ 5546069 (-)
G39371 NA non-coding upstream 495604 5778290 ~ 5812036 (-)
G39377 NA non-coding upstream 533786 5816472 ~ 5895114 (-)
G39443 NA non-coding upstream 985549 6268235 ~ 6268938 (-)
G38490 NA other downstream 3036608 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 3403571 1578955 ~ 1817200 (-)
G38458 NA other downstream 3443550 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 4681180 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 769678 6052364 ~ 6063817 (-)
G39487 NA other upstream 1173035 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 1355794 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 2608803 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 3829755 9112441 ~ 9152405 (-)

Expression


Co-expression Network