G39246 (LOC100846954)


Basic Information

Item Value
gene id G39246
gene name LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5234162 ~ 5250471 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48923
tggtggcaaaacacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctcccttcacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcttTGTCAtcctggaatacccatccacgacccattttcaatgccctggttGAGgaaaggaggttctcacccaagatttgacggtacatcgtccctttgatgtggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacagcGAGTTGAGATGATGCCAAAGAACTtaattttggtctcatctgaccacaacactttcactcagttctcctctgaattattcag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48923 True 566 lncRNA 0.48 2 5234162 5250471

Neighbor

gene id symbol gene type direction distance location
AMCG00012710 NA coding downstream 30997 5190953 ~ 5203165 (-)
AMCG00012707 slc17a8,LOC107553956,LOC107686235,LOC107672209 coding downstream 62940 5153275 ~ 5171222 (-)
AMCG00012708 NA coding downstream 111656 5097321 ~ 5122506 (-)
AMCG00012709 gas2l3 coding downstream 139934 5072885 ~ 5094228 (-)
AMCG00012704 NA coding downstream 228465 4996564 ~ 5005697 (-)
AMCG00012711 NA coding upstream 37557 5288028 ~ 5303893 (-)
AMCG00012712 syt10,LOC106609485 coding upstream 161735 5412206 ~ 5414340 (-)
AMCG00012713 syt10 coding upstream 174230 5424701 ~ 5436981 (-)
AMCG00012714 LOC105020308,LOC104958207,LOC100694258,LOC106609412 coding upstream 383994 5634465 ~ 5639532 (-)
AMCG00012716 NA coding upstream 541567 5792038 ~ 5805393 (-)
G39231 med21,LOC102798687 non-coding downstream 24303 5206604 ~ 5209859 (-)
G39189 NA non-coding downstream 227555 4931244 ~ 5006607 (-)
G39175 LOC106613431,LOC106584099,LOC106573797,LOC106609167 non-coding downstream 303409 4929788 ~ 4930753 (-)
G39174 NA non-coding downstream 317568 4914003 ~ 4916594 (-)
G39160 NA non-coding downstream 447634 4785694 ~ 4786528 (-)
G39281 NA non-coding upstream 137722 5388193 ~ 5408760 (-)
G39295 NA non-coding upstream 295363 5545834 ~ 5546069 (-)
G39371 NA non-coding upstream 527819 5778290 ~ 5812036 (-)
G39377 NA non-coding upstream 566001 5816472 ~ 5895114 (-)
G39443 NA non-coding upstream 1017764 6268235 ~ 6268938 (-)
G38490 NA other downstream 3049999 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 3416962 1578955 ~ 1817200 (-)
G38458 NA other downstream 3456941 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 4694571 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 801893 6052364 ~ 6063817 (-)
G39487 NA other upstream 1205250 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 1388009 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 2641018 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 3861970 9112441 ~ 9152405 (-)

Expression


Co-expression Network