G39279


Basic Information

Item Value
gene id G39279
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5436833 ~ 5437162 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48966
CCTGTGGTGCCTTTACCTGGTATGGTTCTCTCCAAGGGGAAAATATCGGAGCATTTTTCCCGATCCACCTGTCCTCCAAGGCAGAGCTCTGTGACAATCTGTAGAGCCTTTTTACACAGGCTGATACCGTCCTCCGTTGCGCTACTCATGTCTTCCCCCTTAAGCCATGGCTCTCTGTTGGATTCGTGAAGACGGGGTTGCTAGAGAGACACCATCTGCGCTACTGCACGAACTGGCGATGCTGTGAGAGAGTGGCAAGCCTGGTGAACACAAGCTTCCTCATGATATTGACCATAGAGCAAGCCTGACTCCCAGAGTGCTCTGGCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48966 True 330 lncRNA 0.53 1 5436833 5437162

Neighbor

gene id symbol gene type direction distance location
AMCG00012719 si:ch211-245j22.3,LOC105895582,LOC104937698,LOC106573300,LOC107749310 coding upstream 124315 5305061 ~ 5312518 (+)
AMCG00012727 NA coding upstream 158719 5264273 ~ 5278114 (+)
AMCG00012724 stk38l coding upstream 193630 5235166 ~ 5243203 (+)
AMCG00012726 fgfr1op2 coding upstream 247513 5182302 ~ 5189320 (+)
AMCG00012728 NA coding upstream 368070 5045519 ~ 5068763 (+)
AMCG00012733 NA coding downstream 70507 5507669 ~ 5508001 (+)
AMCG00012723 NA coding downstream 166151 5603313 ~ 5629542 (+)
AMCG00012717 NA coding downstream 193241 5630403 ~ 5631119 (+)
AMCG00012722 NA coding downstream 202839 5640001 ~ 5646627 (+)
AMCG00012725 polr3b coding downstream 257969 5695131 ~ 5724754 (+)
G39193 NA non-coding upstream 362707 5037547 ~ 5074126 (+)
G39186 NA non-coding upstream 480966 4949240 ~ 4955867 (+)
G38964 NA non-coding upstream 919202 4517136 ~ 4517631 (+)
G38886 NA non-coding upstream 1460216 3974365 ~ 3976617 (+)
G38882 NA non-coding upstream 1474260 3962363 ~ 3962573 (+)
G39321 LOC100846954 non-coding downstream 210612 5647774 ~ 5648107 (+)
G39382 NA non-coding downstream 485452 5922614 ~ 5923023 (+)
G39445 NA non-coding downstream 847772 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 1075486 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 1324803 6761965 ~ 6762278 (+)
G38954 NA other upstream 1063259 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 1185239 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 3855445 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 4597567 778908 ~ 839266 (+)
G39297 NA other downstream 115255 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 370684 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 615986 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 1039087 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 1907288 7344450 ~ 7381559 (+)

Expression


Co-expression Network