G39371


Basic Information

Item Value
gene id G39371
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5778290 ~ 5812036 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49068
attaaaaaaaaaaaaaaagacatcatGCAGGATTATTTTGTACTGTGAATCTTTTCTTTCCCCACTCAAAACACCAGAGTGCATACTGTAGATCAGAGACACTATACAGATATTTATTGCCAAGTTGTGGATAtaagtttttttaaacattcgTACCAAGTACATGCTGTAAGTAATCCAAGTTAGAATGTTTAATTATAAGCCAATTAGAACATTGTCTGAGAAAGCACTAATTCCCTTTATGTGCAATCCAATTATAGGTTTATCAAAACTTTCCATTAAACATCATTAAATGTTAACACCAAAATCctttattttgtaagtaaatCTCGAATCATCTTTGCAGCAGTGTTGTAAAAGGGTAACTGAAGATACTGAAAGACAAAGGGCAGACTGGTtcaattgaaaaacaatgtaattttaacATGCAATATTCCAGCAAAGGTTTTGGAAAATGATATTCTAAATCTAAAAAGTTTGACGTGACTAACCAGGGGAGGGCTAGTTATGCGATTTTGTTATGGGAAATGTCTGTTCTACACTTTGTAGAACACAATTTTACACAAGTTTTACTGTGATTTGTGTGAGGGAAGTAAAATAATCTCAATTCATGACCTACCAGGAAGCGATAATTAAAGACACCTACCCAAGATTAATTACTGTACCATTTAGAACACTTtaggatatttttttatcaggGTGTGGAGAGATTTAAAAGGATGTCTCTTCCcacaatctttaaaaacaaacaaaaacctcacATTTAATCAATTACCATATACTTAGCGGGAACTACTGAACATTCAATCAATGGATTCTGTACCCGCTATCCCCCTGCCCCTTCCTTAAACATGTTTTCTGCTTAGTAGTGAACATTTTGTGACTGACTTCCCATTCTGATCAACATCTTAATTCCTGAAGAAAATTGAAGCTTCTCAGTGCACATAAAGTTCATAAGAGCAGCAGTTTTCTAATAAGCAGTGCAGTTTTCTGCATTTCCAGAGAATACAAATTATTCCCATGATTCAAGATGCCCCAAAGAGCAAGGTACTGGCTTCTGCAAAACAGAGCCATATACCTCCCGGTGTGTTGCTAAGTAGTTTTACAGTAGCTGTAGTCTCTCTCAcaattttttaaagatgtattctattgaaaataaatgttaataaaaataaataaataaataaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49068 True 1190 lncRNA 0.33 3 5778290 5812036

Neighbor

gene id symbol gene type direction distance location
AMCG00012714 LOC105020308,LOC104958207,LOC100694258,LOC106609412 coding downstream 138758 5634465 ~ 5639532 (-)
AMCG00012713 syt10 coding downstream 341309 5424701 ~ 5436981 (-)
AMCG00012712 syt10,LOC106609485 coding downstream 363950 5412206 ~ 5414340 (-)
AMCG00012711 NA coding downstream 474397 5288028 ~ 5303893 (-)
AMCG00012710 NA coding downstream 575125 5190953 ~ 5203165 (-)
AMCG00012715 NA coding upstream 18582 5830618 ~ 5831514 (-)
AMCG00012730 NA coding upstream 178067 5990103 ~ 5997112 (-)
AMCG00012731 cry1aa,LOC108426403,LOC108279922,LOC105900698,LOC103023024,LOC107757210 coding upstream 259887 6071923 ~ 6086826 (-)
AMCG00012735 NA coding upstream 422640 6234676 ~ 6239419 (-)
AMCG00012736 NA coding upstream 444794 6256830 ~ 6257924 (-)
G39295 NA non-coding downstream 232221 5545834 ~ 5546069 (-)
G39281 NA non-coding downstream 369530 5388193 ~ 5408760 (-)
G39245 NA non-coding downstream 495604 5220771 ~ 5282686 (-)
G39246 LOC100846954 non-coding downstream 527819 5234162 ~ 5250471 (-)
G39231 med21,LOC102798687 non-coding downstream 568431 5206604 ~ 5209859 (-)
G39377 NA non-coding upstream 4436 5816472 ~ 5895114 (-)
G39443 NA non-coding upstream 456199 6268235 ~ 6268938 (-)
G39462 NA non-coding upstream 473419 6285455 ~ 6287935 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding upstream 960932 6772968 ~ 6847396 (-)
G39556 NA non-coding upstream 974420 6786456 ~ 6795733 (-)
G38490 NA other downstream 3594127 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 3961090 1578955 ~ 1817200 (-)
G38458 NA other downstream 4001069 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 5238699 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 240328 6052364 ~ 6063817 (-)
G39487 NA other upstream 643685 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 826444 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 2079453 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 3300405 9112441 ~ 9152405 (-)

Expression


Co-expression Network