G39377


Basic Information

Item Value
gene id G39377
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5816472 ~ 5895114 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49078
ctccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggactacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatattatatat
>TU49079
ctccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggactacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatacacacacacacacatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49078 False 343 lncRNA 0.41 2 5818186 5895114
TU49079 True 351 lncRNA 0.42 2 5816472 5895114

Neighbor

gene id symbol gene type direction distance location
AMCG00012716 NA coding downstream 11079 5792038 ~ 5805393 (-)
AMCG00012714 LOC105020308,LOC104958207,LOC100694258,LOC106609412 coding downstream 176940 5634465 ~ 5639532 (-)
AMCG00012713 syt10 coding downstream 379491 5424701 ~ 5436981 (-)
AMCG00012712 syt10,LOC106609485 coding downstream 402132 5412206 ~ 5414340 (-)
AMCG00012711 NA coding downstream 512579 5288028 ~ 5303893 (-)
AMCG00012730 NA coding upstream 94989 5990103 ~ 5997112 (-)
AMCG00012731 cry1aa,LOC108426403,LOC108279922,LOC105900698,LOC103023024,LOC107757210 coding upstream 176809 6071923 ~ 6086826 (-)
AMCG00012735 NA coding upstream 339562 6234676 ~ 6239419 (-)
AMCG00012736 NA coding upstream 361716 6256830 ~ 6257924 (-)
AMCG00012742 NA coding upstream 394517 6289631 ~ 6327075 (-)
G39371 NA non-coding downstream 4436 5778290 ~ 5812036 (-)
G39295 NA non-coding downstream 270403 5545834 ~ 5546069 (-)
G39281 NA non-coding downstream 407712 5388193 ~ 5408760 (-)
G39245 NA non-coding downstream 533786 5220771 ~ 5282686 (-)
G39246 LOC100846954 non-coding downstream 566001 5234162 ~ 5250471 (-)
G39443 NA non-coding upstream 373121 6268235 ~ 6268938 (-)
G39462 NA non-coding upstream 390341 6285455 ~ 6287935 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding upstream 877854 6772968 ~ 6847396 (-)
G39556 NA non-coding upstream 891342 6786456 ~ 6795733 (-)
G39561 NA non-coding upstream 1002873 6897987 ~ 6898237 (-)
G38490 NA other downstream 3632309 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 3999272 1578955 ~ 1817200 (-)
G38458 NA other downstream 4039251 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 5276881 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 157250 6052364 ~ 6063817 (-)
G39487 NA other upstream 560607 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 743366 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 1996375 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 3217327 9112441 ~ 9152405 (-)

Expression


Co-expression Network