G39462


Basic Information

Item Value
gene id G39462
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6285455 ~ 6287935 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49191
NNGAACTTGGAAGGTAGGCCGTCATTGGGGCTCAGATATAAGAATTGGAGTTCCAGATTAGAACCCTGAGTCTTTTAAAAGTGCTGTGAACGGATCCATATTTGATACCTTGATTATAGGAGCAGAGTGGAGTCTTATGTCCCTGTTAAACCTGTATTCTAATGACCTTATCAAGCTTTAAGCTCCATCAGACCATTCAAACGATAAAATAATCCAACCAAGTCggactttatatttattttgtaaaatacgACATTGTCTGGCCTCCTGTTTGAGTCACAACCTTGGATTCAGCAATAGTCAGGATTAAAAAAACTACCTCAGTTCGACAGCCATTTGCAACTCCATCTTACACGACACTTGGCTGAGCGACAAAAAATGTGGACATGAGCAGTTACAGGAAAATCACGTTTGGGATTGCCCAATTTGTGCATTACAGCCCAAAGCAAGAAATTGCAGGAAGTGAGGAAGGCGTCACCTAAGGTTGACCTTGTAATAAaagctacatttaaaacaattgccATGCAGGAATGTGATGTGCGTTCGTCCATTGAACACGGCACATtcaatatgcaaattaaatgtaatacaacagAAAATTTAACTTTAGCTAGAGGTGTAAAATGCGTTCTTTATCAGCGAGTACAGCACAGGGCCAGGACTATCACCTCTCTTTCAGATACCAATCTCCAGGGGTTTCTTAAACTGAActtaaaatatgtgacattttgaaatcaCTGACTGCTCACCCCAGTATTTTACCTATTCACGCATGTTTTTTAACTGTGAATATTTGGCAGGGCTCCAGCCGCAGGGGAGATTTCTTGTCCTCGTCTCCTGTTCACGAGAGGGAATGCTGGGTAACATGAGGGTCACGCATGCTGCCCAAGGCTTATGAATACAGCACTGACCGGAAGACTACCTTCTGCTTAATTCAGCCCTTTctgaaaaggcaaaataataTAGTTTTACATCACTAATCCCTAATAGCACACCATAATAGAGTGGCCGCTATCACATTGACAGCAAAACACGAAAaggtttgtaaatattttaagagcAAAATTTGGAATAGTGGTTAGTGTGGTTTTTACCTTAATGCGacaaataatttgttatttttttctttcaatgttttttttttttttttctattaatgtaACATTGTGCAAAAAAAAGCTGCTGTAAATAAATCTTTTTCTGCGGGGGTAGCGTTACTTTTGAGTGCAACTTTAAACGTGCCACAGTGAGTTCCAAGgaaatgttctctctctcacaatcaggttttgtactttgtttttgttttgtactcaCTGGTCTTGACTCTTGCCCTGCATTGTGCCTGAGgcctaaaccaaatcaaaatgtcacCCTGCTTGCAAATCGTAAAAtacaaacttgtatttattgattagaAGCCACATTTCTTGTGCACCCAATTTTTATTTAGAAGTACATTTGCCATTCAAAATTCGTTGGTAAGTCAGTGTTGATGTGGTCTAGGCCCTGGTATCATCTTAAGGCAATGGGGCATTTATTTTGGTAGgttaaaaaaagtgatttaaataaatttgcTCAATAGGTTTATCATCTTAGTTTTTTCATGGAAGGCTAACAGGTGGGGTTTTCTCTACATTTGGTTAGTAGTGTGACCTAAGAGGTCTTGCTAAAAGTCCACTGCATTTACAGTTCTGCTTGGGCTAAGAAATAAATCCAATACATTCACTTTGTACCAAAAATTAAGAaattttatgtaattgtaattcatactggtgaatacatttaacatacatGTCCTTTGTTAATACAGGTATTTCATCACTTCTTTGTggagttattttttcttccttgggGAGGATGTCAGCTGTTTTTAACATGAAggagatggggtgggggggacacaGCTGTTCTGCAGACCAACTAAGGGTCAGACAGAATCAGAATGTCAACCAATCTGCCTGGTGCAATTTGTAAACATGGTACTTTTGTGGTAGGTTTGCACGAAGTGAAAAGGAATGATCCACACTGGAATTGGAGTGTATGATTTGCGAATGGGTCAACCTCTTGATTTTGTCCAGTCCTATGGCTGGTTCTTGCTGTATTTTTAAGCCCTGCTCTCGTTTTCTGCTTTTGAATGTGCGTCATGAACAAACGCACGTTTAGTTTTGTTGGCAGCCTCTTTGTGTTTGCTGTAAGGAGACCTGAACGCTGGCAGGACCTCGGAGAAGGTTTTAAAGCATGCCCTTAACTGGGACTGTATGGACAGTGTGGGAAGATGGTGGCAGGGtcggaggtcagaggtcaggggtcgACTGCTGTGGGAGCTCAAGGAGTTGCCTGTTTATCAATGCAAATCATTTCCtgctgttcattttttaaatgctatgtATAGAATTATTTAAAGTTGAATTGTTTCAGCAGGCAGTTATTCACACATgactgtttcatgttttttaattctattaataaaaaaaatgtggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49191 True 2481 lncRNA 0.39 1 6285455 6287935

Neighbor

gene id symbol gene type direction distance location
AMCG00012736 NA coding downstream 27531 6256830 ~ 6257924 (-)
AMCG00012735 NA coding downstream 46036 6234676 ~ 6239419 (-)
AMCG00012731 cry1aa,LOC108426403,LOC108279922,LOC105900698,LOC103023024,LOC107757210 coding downstream 198629 6071923 ~ 6086826 (-)
AMCG00012730 NA coding downstream 288343 5990103 ~ 5997112 (-)
AMCG00012715 NA coding downstream 453941 5830618 ~ 5831514 (-)
AMCG00012742 NA coding upstream 1696 6289631 ~ 6327075 (-)
AMCG00012743 NA coding upstream 74514 6362449 ~ 6378254 (-)
AMCG00012744 NA coding upstream 124796 6412731 ~ 6435631 (-)
AMCG00012745 NA coding upstream 164074 6452009 ~ 6460026 (-)
AMCG00012752 NA coding upstream 319259 6607194 ~ 6619758 (-)
G39443 NA non-coding downstream 16517 6268235 ~ 6268938 (-)
G39377 NA non-coding downstream 390341 5816472 ~ 5895114 (-)
G39371 NA non-coding downstream 473419 5778290 ~ 5812036 (-)
G39295 NA non-coding downstream 739386 5545834 ~ 5546069 (-)
G39281 NA non-coding downstream 876695 5388193 ~ 5408760 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding upstream 485033 6772968 ~ 6847396 (-)
G39556 NA non-coding upstream 498521 6786456 ~ 6795733 (-)
G39561 NA non-coding upstream 610052 6897987 ~ 6898237 (-)
G39580 NA non-coding upstream 862682 7150617 ~ 7150823 (-)
G39662 NA non-coding upstream 1383301 7671236 ~ 7671642 (-)
AMCG00012732 NA other downstream 221638 6052364 ~ 6063817 (-)
G38490 NA other downstream 4101292 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 4468255 1578955 ~ 1817200 (-)
G38458 NA other downstream 4508234 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 5745864 514222 ~ 539591 (-)
G39487 NA other upstream 167786 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 350545 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 1603554 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 2824506 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 4452419 10740354 ~ 10753698 (-)

Expression


Co-expression Network