Gene
RNA
| Item | Value |
|---|---|
| gene id | G39560 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 6897997 ~ 6898230 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0005515 | protein binding | molecular_function |
| id | description |
|---|---|
| ko03050 | Proteasome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU49318 | True | 234 | lncRNA | 0.52 | 1 | 6897997 | 6898230 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00012756 | etnk1,LOC106609326 | coding | upstream | 54656 | 6823862 ~ 6843341 (+) |
| AMCG00012755 | NA | coding | upstream | 102268 | 6783452 ~ 6795729 (+) |
| AMCG00012754 | kras,rask,LOC103038241,LOC108428819,LOC105900436,LOC108274959 | coding | upstream | 117179 | 6765079 ~ 6780818 (+) |
| AMCG00012753 | NA | coding | upstream | 138422 | 6643345 ~ 6759575 (+) |
| AMCG00012746 | NA | coding | upstream | 270181 | 6625994 ~ 6627816 (+) |
| AMCG00012762 | NA | coding | downstream | 348932 | 7247162 ~ 7279658 (+) |
| AMCG00012761 | lyrm5a,LOC106576136,LOC107658915,LOC107725960 | coding | downstream | 392621 | 7290851 ~ 7292904 (+) |
| AMCG00012767 | parvb,LOC103134461 | coding | downstream | 498349 | 7396579 ~ 7422773 (+) |
| AMCG00012768 | NA | coding | downstream | 528751 | 7426981 ~ 7455406 (+) |
| AMCG00012775 | NA | coding | downstream | 923742 | 7821972 ~ 7832788 (+) |
| G39538 | NA | non-coding | upstream | 135719 | 6761965 ~ 6762278 (+) |
| G39490 | LOC103376870 | non-coding | upstream | 361604 | 6512648 ~ 6536393 (+) |
| G39445 | NA | non-coding | upstream | 610061 | 6284934 ~ 6287936 (+) |
| G39382 | NA | non-coding | upstream | 974974 | 5922614 ~ 5923023 (+) |
| G39321 | LOC100846954 | non-coding | upstream | 1249890 | 5647774 ~ 5648107 (+) |
| G39586 | NA | non-coding | downstream | 315515 | 7213745 ~ 7218459 (+) |
| G39668 | NA | non-coding | downstream | 810637 | 7708867 ~ 7713243 (+) |
| G39669 | NA | non-coding | downstream | 816267 | 7714497 ~ 7735268 (+) |
| G39737 | NA | non-coding | downstream | 1008027 | 7906257 ~ 7909166 (+) |
| G39776 | NA | non-coding | downstream | 1158789 | 8057019 ~ 8132564 (+) |
| AMCG00012748 | itpr2,LOC100196824 | other | upstream | 380014 | 6476249 ~ 6517983 (+) |
| AMCG00012734 | NA | other | upstream | 841165 | 6053148 ~ 6056832 (+) |
| AMCG00012718 | NA | other | upstream | 1074482 | 5807846 ~ 5823515 (+) |
| G39297 | NA | other | upstream | 1345230 | 5552417 ~ 5552767 (+) |
| G38954 | NA | other | upstream | 2524423 | 4370313 ~ 4373574 (+) |
| AMCG00012763 | NA | other | downstream | 446220 | 7344450 ~ 7381559 (+) |
| G39670 | kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 | other | downstream | 827258 | 7725488 ~ 7727828 (+) |
| G39709 | LOC101154678 | other | downstream | 937116 | 7835346 ~ 7836214 (+) |
| AMCG00012797 | NA | other | downstream | 1437668 | 8335898 ~ 8345855 (+) |
| AMCG00012803 | sult4a1,LOC102784496,LOC106576158 | other | downstream | 1638003 | 8536233 ~ 8569891 (+) |
