G39586


Basic Information

Item Value
gene id G39586
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7213745 ~ 7218459 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49358
GAATCAGAAGTGTTTCCCTTTAATAAActacacaacaaaatacatattgagAAGAATGTACAAAGACACATATGggtctaatatatattttattaatgggaTTAACATACTAGGAACATATCATTTTACTGTGTTCAACAGAtcacacaaaatataaactatagaaatataaatctCTACAGCATACATCGCCCATTATTTGTGCTTAGAAACAACATGACAAACGCAGATCAAGGCAGCAGGGCTTTCACTGGCGACCAATATAGACCTAAATgttatttctattaaatatttagaataattgtcataatttatcatttttaagaatctttaatatatttgcatattgtaTCCTTAGAAACATTTGATTCTGCTGCcagcaagttaaaaaaaatcaaaaaatgaatataGTGTTTGTGCTGAAGTAGAAGTATATAAATCAAGTTAGAAGTGTTCTTTGTAAAGAGGCCTCCACCAAAGTGAATTTAGTATATCATGAAACGATGTTATAGTTAAATAGCCTTCATGTGGATCAGAGACTGCCTGTGATTTCATTAAGTGCTTCTCGCTGATGTAAAGATGACAATTGAACGGTTTGTATTCTTGCCACAACACCCGCGCAAACCATTCACATCAGTCTGTGCCACTGTTCATACTCAAAAATGCAGAAGTCTTTCTATAATTCAACTAAATTGCAAACAATCGGATAATCTGATTACAGTAGGCGGTTTGTGGTCAATAAAAGTAACAAACATTGCGTTCCTAATTGCAAGTGTTACCGTTTGAGTTAACTTATCTAACCTTTATTTGCTCATAATAAAGTTATGCCTGCATGTGTGTGCCTTTTTTCCATGCATTTGCTTATATAATGTTCCCTGCAAATTATATATCATACATAGGAggcattcaaatgtaaaacttgAAAACTTAAAGGTTGAATGAAGCAAATACAGTAGGAAATAGGACCTTTTCCCTCCAGTTATTACCTGAGACCAAACAAAGGTGGGTTTATTACCATCAGTGGAATGTTTAATCTGAAGCTAATAAAActataacaaatacagtactaTGCCTGTTGCTTTTTCCTGCTTTGATTCCTAACAGTAGGATAAAACATATGACCTAGCCCTTGTGCAAGAATACCCTGTGAAATTTACCATTGGAagttttcacttttaatttggttaaaataattgtatgaataAATCATGGTTTGCTATAATAAACATGCCTTAGAAATATTTATCGTGGTATATAATTGCATTCCCAGGttacagtgtagtaaagcaGATAAAAGTTATGTTGAACCCATAGGAGACCACTTTAAAACTTTTCCTATTGTAAATGTACCAGGGTAAACTTGCATAACAGACTGGATTAAAATAAGAGGAAATAATACACACATCAAATATTTCACACCAGtaatttaacacacacaaatgcacgtACATGTCTTTTATGAAGACCACATCATAGAATTTCATATGTTTAACATCTCAATTCTATTGTCCATTTCTTATACTTGTTCTAATTATATTGAACTCTTGGTAATTCAATTACATGGTAGTCATCATAAAAGTCTATGGTTTTATCAAGGTCCTttggtaaacaaaaaaaaagtgcacattttaaaaccacaaagaaaatacatctgtCTCTAGGCTCTGGTTGTCTACATATGATACCTGTTATCCTACAGCTATTATTCTAATGAAATGTGCATTCATGTATGAAattctgaaaacatttcagcAGAAACTATTCTTGTTATCAATTTGAAGTTTGGTGCATCTTTCTCCAGACTAAGAATTACTATCAAAGCGCAAAggtattcaaatacatttagtcTAGATATGCAATCGTACAGAAGTTgtagatttattatatattattattattactactattattatttgtattattattttcagcatACTGTAGACATATCTTCAGGAAGATGCATTAGGAAACTGGCAATTTGGCAATTGCTtccatgtgttttgtgttttattattaaactacaCTTTCAACAGATACAACCTTTAACAAGAGTAACAAACTGTGCTTCAGTCTAGACTTTGTGCTTCTGTTTCAGATGAGTCCAGTAAAAAGTGCTTTcatcaatatttcaatattcatGGTTACACTAATTGACTCTAAATGTGAGGCAGTACTGATTCTTCAACAGTGTCTGAAGTGGAAATAAAGGTTGTGTCTGATAGAGGctgtattcataaattatttccCTGGACCCTGTCAGTTTAAACATccctttaaatatgtattttaatattgaactTATCTGCATAACACAATGACAGTACTTTACTGAGAGTATCTATACAGACACAAAACCACAGAGAAGCATTCTGCAGAAACACGTCCAGAGCTACACTGAACTTTATTGCTAACTACGACATTTCATTGACAAGATTAAAAGGCCATATGCAACCATCTCAAGTTCATCTATTGGTGCTCAGGTTCACAGTCAAATGGACTATGACTATATGACTACCAGACTATGTGAATTGAACTGATCAGTTAATTGAACTgatactttacatttttcttgtgcCATTCAGAGAATAATGACAGATATGGCTGAAGAGAAGCAAAGGCTTGGCAACAAATTAGTGATGGATCATTAAGATGTAAGGTGtcctgtaataataattagaaaaggGATTTTAATCTTATATGGATTTCATGTAGTTTTGCAGttttgtgaaggaaaaaaaaacacatactatTTCCATGTGCCAATTTCATTCTGTTAttaattgtctttctttcttgttttttttcattgtttatttggtttccCCATGCTTCACTGGTAATATAATGTTAATCCATTTTTAATAACCCGTTTCATGAACTGTTTCATTTTGAGGAATTGCACATGACCTTCAGGGTACAATTAttgcacacacaaaatgcaGCTACCATCACATTGAGGTAATAACTTATTGTGTTCACACTAAGGATCTACATTAAATCAGTGTTGATTGCCAGTGTTTACAATTGTGCTCTGAATAATTGTGTACACATACTGTGTCACAAGGTCTGAAGAAACCCTCTTTCATCTTCATTACACCAGGTATGCCCAGTCACTCTGTACTCTGCCATATGAATATCGGTGAGCTGTTTCAGTATTCTTGTGGTTAACTTTGGTCCATTTTCCATAGTGGGGATG

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU49358 True 3196 lncRNA 0.33 2 7213745 7218459

Neighbor

gene id symbol gene type direction distance location
AMCG00012756 etnk1,LOC106609326 coding upstream 370404 6823862 ~ 6843341 (+)
AMCG00012755 NA coding upstream 418016 6783452 ~ 6795729 (+)
AMCG00012754 kras,rask,LOC103038241,LOC108428819,LOC105900436,LOC108274959 coding upstream 432927 6765079 ~ 6780818 (+)
AMCG00012753 NA coding upstream 454170 6643345 ~ 6759575 (+)
AMCG00012746 NA coding upstream 585929 6625994 ~ 6627816 (+)
AMCG00012762 NA coding downstream 28703 7247162 ~ 7279658 (+)
AMCG00012761 lyrm5a,LOC106576136,LOC107658915,LOC107725960 coding downstream 72392 7290851 ~ 7292904 (+)
AMCG00012767 parvb,LOC103134461 coding downstream 178120 7396579 ~ 7422773 (+)
AMCG00012768 NA coding downstream 208522 7426981 ~ 7455406 (+)
AMCG00012775 NA coding downstream 603513 7821972 ~ 7832788 (+)
G39560 NA non-coding upstream 315515 6897997 ~ 6898230 (+)
G39538 NA non-coding upstream 451467 6761965 ~ 6762278 (+)
G39490 LOC103376870 non-coding upstream 677352 6512648 ~ 6536393 (+)
G39445 NA non-coding upstream 925809 6284934 ~ 6287936 (+)
G39382 NA non-coding upstream 1290722 5922614 ~ 5923023 (+)
G39668 NA non-coding downstream 490408 7708867 ~ 7713243 (+)
G39669 NA non-coding downstream 496038 7714497 ~ 7735268 (+)
G39737 NA non-coding downstream 687798 7906257 ~ 7909166 (+)
G39776 NA non-coding downstream 838560 8057019 ~ 8132564 (+)
G39838 NA non-coding downstream 1050535 8268994 ~ 8269221 (+)
AMCG00012748 itpr2,LOC100196824 other upstream 695762 6476249 ~ 6517983 (+)
AMCG00012734 NA other upstream 1156913 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 1390230 5807846 ~ 5823515 (+)
G39297 NA other upstream 1660978 5552417 ~ 5552767 (+)
G38954 NA other upstream 2840171 4370313 ~ 4373574 (+)
AMCG00012763 NA other downstream 125991 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 507029 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 616887 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 1117439 8335898 ~ 8345855 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other downstream 1317774 8536233 ~ 8569891 (+)

Expression


Co-expression Network