G39668


Basic Information

Item Value
gene id G39668
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7708867 ~ 7713243 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49474
tttttgttttgtttttttaaatagtttaatttgtaaactCTCCCACCCCAGTACAAATCATGGAGCGACATTCATTTGGTTTTGCTCAAattcacattaattaaatatcataATTCACGGacataaaagaaaatgattagCCAAGGCACAAAGCATAAGAAAGCAAACAATGAATGCAAACAATGAATTTGTCTTTGATGAGAAAATATTACAGTACAAACAATGAAGTAAAACAAGTCAAATAGACAAACAAAATTCACCACTGTGCTCCATCTGAAGAGGTGAAAATCTTGCATTATCTTGTAATTAAACAGTATCACAAAtcttattcattaaaatatgaaggGAAAAATCCTCAGACCTTTAATGCCGTTAGAGTTCTCACTATCAGTTAAAAGCAGTctggtcatttttttttgttccagttttaagaaaatttaaaatgaaaaatgaataatcattcagtaaaacaattaaaacaagacGTCTTCATTACATGCAGAAATTTGTAATTTCTAATATATATGCCATTACATTTCAGCAGCAGATGGGATGAAATCATGGTGTCTTTTCTCCAAAATTGAGTAAagacaagtgaatacaataagcAGGTGTGAATGTTACTCATATTTTAGTGACACTCCTACATGTTCACTACAGTGGGCAAATCAGAGGTATCCTTAACAAGGAGTTTCAAACAGGTGAAAGACTGTAGGaagatttcacatttcacatatGCAGCATAAATTGAACACTTTAAGTTTTCTATGgtaaacatttttatgtttttatgttttctttcatgatttaatttttGAGACCAGGAAAATATGTTGAAGAAAATTTATGCTAACAGAGGATGTATTAGTATGTCAATGGAAATTAGTTCACTGGAGTGGTCAATGGTACAGATTTACATACTGAAGACCAACTCATGTCTGCAGTGAAATGAAAGTGACATCAACATTTCTTCATCTGATTTTCCCTTCATAGATTGTTACTTAATATCCATGAATCAAACTTCCTGATTACTTGTACTTCATATATGTTTAAACAGTGGTCTCTCTCCTGGTCCTGTAGAGCCCCAATACAGTTAGTTGTATAGGTCACCCATTGTTAGTTGTATAAAGCACCAATTACTGAAGAGGGGGACTTTAGTTATCAGTTAAACAACTCACTTTTTCAGTCAATCATTCAGTCCAAATAATCCAAATAATCtctgaattattaaaaatgcttaTTGCAACAGAATTAAAAGTTTAAGTCTTCATAAATTTGTGCTTTAAGGGTGGCCTgtaaaacctgctggactggGTCTGTCCACCGGAGGAGGTGCGAGGGGAACACCCTGCCCATGCCGACTCAGAAATTCTTGCGGTCAATCTTTTCCTGGGTGTCCTTGGAAAGTGCCATCTCCTTCAAGAGCAGCACGTGCTCAGCCATCTCCCGTAttgccccctgccctgctgcaCAGTGACAAGTATATTTCGCCGCTTTCACTGCCACCGAGGGGGCGTCCAGGGGCACACCGCTCACCCCAGCCAGATTCAGACAATCCACGTCAGGCTTGTCATACCAAAATAAGCCACATCCTTCCATGACAGTTGTCGCTCCTTCATGAGCCGCTGCACCTCCTCCTGTTTGTTAGCTACTTTCTGCTTCAACTGACAGCCCAGCTTCTTGGCAATGAGTTTCTGGACGGGGGAGTCGCTAGAAGAGATGAACAGCACCTGGGGAAGACATGACACGGGGAGAATTATAAAAAGGGTCGATTTACTcctaaaataaatcatacaaaacctctagaatgtaattttattagcagattgaAAGGAAACGTTTGTTTTCATGAActaaagaggagaaaaaagtacctaataacaaaattaaaacaattacagcagGGGTAGTCATTtttttgtcagggtccaaatttcttggtcaaggttcaaatgcccctttccaacacacacacacaattctgtgaattagtaatatagcccgttgcttatatttagtacattcatttgacaaagtacaaaaataaaaaaagttgaaatagatgtaaatataagtattaaagtgctttcagaccacttttaattgttgtaatttgttaaagattattgtaggcatatagataaacataaaataaacttttcaagcattttgtgtcttattcgATTCAAGTCTTTACTACTTCTCTTTTCATTGTacactgttcaaaattaatattgcaaaatgagggcaaagatgATTGAGGAATTCAGGgcagggggtctgggggtcctcccccagaagatttggacaattggagacctgaaatgcgcaATTCATTTCGAAGTCGAAAAACTTAggtcaaaatctccatgaaatccatgaaatcaggcagatttggacaaccagcaaaaaaatcacacatcaacagaaattatacatgcaaactagacatggtttctggtgcttatcaatcacagatctatttcagtgggtctctgtgattgaaacaggtgaggatgcaccattttctatttgtgcacctgctagaaatgtgtgtctgcattggaaatcagctgtttccaaccccgatgtaggagtttctaggtgaatacaagctataGCACCGTGCCCTCCCCTGCCTGGTCCTGTGTATGCACTTCTATATTTTGGAGGTGAgattgaaatatgtccacatgtCAAACGATccgcagtttagctgtttatttatagaaatcaggaaaacaaacagaatacctgtgtttttgacGAGTACAAAGTGTATAGAGACGCCCGAACAGGGAATCTGTGCGCAATCAACTCACTAACATGAACACTAGCTCTATAGGATatcccatattaatacgtaacatcctattggctaataaccaggaagtgcagctactaggttccacacaataacaagcactgagtgcaacaaacctccattaacaatacataaaataaaataaaaatcaatcatgataataacttaaataaaattattctcACGGTCCATTAAAAAGCATCTGGTggtccggatttggcccgcgggtcgcctattgactacccctgaaTTACAGGTATAATCAGTAGCTCAGTCTTTGTCAAAGGTAATTATATCTAATAAATGAGAACTTTACTTCATTCTTTAATGCTTCGTTCATTGGCCgagtttctttttatttattttattaatcccTAGCAACAGGTCTAAAACCTACTGCAGTTTAAGATTTCACAATGATTTCAcaatattcatacacacacacgcacatgaaAGAAGaccctaacaaaaacaaatacttcagCTACACCTActcacaaattattttttaatattagtttTCACTAATATTAGTCTCTCAGATAACCCAGCTGTACTAGCGTGACCTGTATCTTCCACCGATAACACTGTTTCTCTCCGCTTGGGAATGCAGAACAATCACACAATGGAGGTCCACCACAGGACTGAACACACAGGGTTACATGTCCTTCCCTCCCCCATCCTGCAGATGTTCTACGAATAAAGGGAATACCTCGACTCCACTATCCTGCAGCAGCTTCACCGCCATAGTGTCTTTGACATTAACAGACAGGATCTCTTCCCCAGTGGTGGACATGTAGAGCTTTCCATCAGTGAGACACCCGTCAAAATTGGTGACAAACAGTTTTACTTGCTCCAGCTTGTCCCGTCCAAAGTATCCATACctGAGAACTCTCTGTTCTGCTATTGGCCAGTCAATATCAACATCAATGTCCACACTGTACTCTGGGAGCATTTCATAGTAGATCATATTCCCAccctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49474 True 3806 lncRNA 0.38 3 7708867 7713243

Neighbor

gene id symbol gene type direction distance location
AMCG00012768 NA coding upstream 253461 7426981 ~ 7455406 (+)
AMCG00012767 parvb,LOC103134461 coding upstream 286094 7396579 ~ 7422773 (+)
AMCG00012761 lyrm5a,LOC106576136,LOC107658915,LOC107725960 coding upstream 415963 7290851 ~ 7292904 (+)
AMCG00012762 NA coding upstream 429209 7247162 ~ 7279658 (+)
AMCG00012756 etnk1,LOC106609326 coding upstream 865526 6823862 ~ 6843341 (+)
AMCG00012775 NA coding downstream 108729 7821972 ~ 7832788 (+)
AMCG00012777 NA coding downstream 149016 7862259 ~ 7864830 (+)
AMCG00012778 NA coding downstream 223137 7936380 ~ 7958975 (+)
AMCG00012786 NA coding downstream 320851 8034094 ~ 8034399 (+)
AMCG00012785 LOC103366393,LOC100698773,LOC102312910,LOC101485159,LOC102205266 coding downstream 328559 8041802 ~ 8077147 (+)
G39586 NA non-coding upstream 490408 7213745 ~ 7218459 (+)
G39560 NA non-coding upstream 810637 6897997 ~ 6898230 (+)
G39538 NA non-coding upstream 946589 6761965 ~ 6762278 (+)
G39490 LOC103376870 non-coding upstream 1172474 6512648 ~ 6536393 (+)
G39445 NA non-coding upstream 1420931 6284934 ~ 6287936 (+)
G39669 NA non-coding downstream 1254 7714497 ~ 7735268 (+)
G39737 NA non-coding downstream 193014 7906257 ~ 7909166 (+)
G39776 NA non-coding downstream 343776 8057019 ~ 8132564 (+)
G39838 NA non-coding downstream 555751 8268994 ~ 8269221 (+)
G39951 NA non-coding downstream 953511 8666754 ~ 8667464 (+)
AMCG00012763 NA other upstream 327308 7344450 ~ 7381559 (+)
AMCG00012748 itpr2,LOC100196824 other upstream 1190884 6476249 ~ 6517983 (+)
AMCG00012734 NA other upstream 1652035 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 1885352 5807846 ~ 5823515 (+)
G39297 NA other upstream 2156100 5552417 ~ 5552767 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 12245 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 122103 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 622655 8335898 ~ 8345855 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other downstream 822990 8536233 ~ 8569891 (+)
AMCG00012818 NA other downstream 1370419 9083662 ~ 9085700 (+)

Expression


Co-expression Network