G39709 (LOC101154678)


Basic Information

Item Value
gene id G39709
gene name LOC101154678
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7835346 ~ 7836214 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49527
attggTGCACAAATCTTTCCCTAGAAGatttcactgtagggatggtattggccaggtgatgagcggtgcatggtttcctccagacatgacacttgccattcaggccaaagagttcaatctttgtttctcatggtctgagagtccttcaggtgccttttggcaaactccaggtgggctgtcatgtgccttttactgaggagtggcttccatctggccactctaccatacaggcctgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacgtgctggagctctgtcagagtgaccatcgggttcttggtaacctccctgactaaggcccttcttccccgatcactcagtttggccgggcggccagctttaggaagagtcctggtggttccaaacttcttccatttacggataaTGGAGgtcactgtgctcattgggaccttcaatgctgcagataTTTTTCTGtaccttccccagatctgtgcctcgatacaatcctgtctcagcAGTCTACAggcaattccttggacttcatggcttggtttgtgctctgacaggCACTGTTAACTGTAGGACCTTacatagacaggtgtgtgcctttccaaatcatgtccaatcaactgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcagtggaaacgggatgcacctgagctcaattttgagtgtcatggcaaaggctgtgaatacttatgtacatgtgctttttttgtttttatttttaatacatttgcaaagatttcaaacaaacttctttcacgttgtcattatggggtattgtttgtagaattttgagagaa

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49527 True 869 TUCP 0.46 1 7835346 7836214

Neighbor

gene id symbol gene type direction distance location
AMCG00012775 NA coding upstream 2558 7821972 ~ 7832788 (+)
AMCG00012768 NA coding upstream 379940 7426981 ~ 7455406 (+)
AMCG00012767 parvb,LOC103134461 coding upstream 412573 7396579 ~ 7422773 (+)
AMCG00012761 lyrm5a,LOC106576136,LOC107658915,LOC107725960 coding upstream 542442 7290851 ~ 7292904 (+)
AMCG00012762 NA coding upstream 555688 7247162 ~ 7279658 (+)
AMCG00012777 NA coding downstream 26045 7862259 ~ 7864830 (+)
AMCG00012778 NA coding downstream 100166 7936380 ~ 7958975 (+)
AMCG00012786 NA coding downstream 197880 8034094 ~ 8034399 (+)
AMCG00012785 LOC103366393,LOC100698773,LOC102312910,LOC101485159,LOC102205266 coding downstream 205588 8041802 ~ 8077147 (+)
AMCG00012798 NA coding downstream 606190 8442404 ~ 8443642 (+)
G39669 NA non-coding upstream 100078 7714497 ~ 7735268 (+)
G39668 NA non-coding upstream 122103 7708867 ~ 7713243 (+)
G39586 NA non-coding upstream 616887 7213745 ~ 7218459 (+)
G39560 NA non-coding upstream 937116 6897997 ~ 6898230 (+)
G39538 NA non-coding upstream 1073068 6761965 ~ 6762278 (+)
G39737 NA non-coding downstream 70043 7906257 ~ 7909166 (+)
G39776 NA non-coding downstream 220805 8057019 ~ 8132564 (+)
G39838 NA non-coding downstream 432780 8268994 ~ 8269221 (+)
G39951 NA non-coding downstream 830540 8666754 ~ 8667464 (+)
G40022 NA non-coding downstream 1214873 9051087 ~ 9053819 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 107518 7725488 ~ 7727828 (+)
AMCG00012763 NA other upstream 453787 7344450 ~ 7381559 (+)
AMCG00012748 itpr2,LOC100196824 other upstream 1317363 6476249 ~ 6517983 (+)
AMCG00012734 NA other upstream 1778514 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 2011831 5807846 ~ 5823515 (+)
AMCG00012797 NA other downstream 499684 8335898 ~ 8345855 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other downstream 700019 8536233 ~ 8569891 (+)
AMCG00012818 NA other downstream 1247448 9083662 ~ 9085700 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 1276246 9112460 ~ 9130211 (+)
G40224 NA other downstream 2600693 10436907 ~ 10444447 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G322744 NA non-coding NC_047615.1 CM018561.1 18811105 ~ 18812335 (+)