G39838


Basic Information

Item Value
gene id G39838
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8268994 ~ 8269221 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49699
tgttgatataggcaaccaaccgctgtgttgtccgtccggacCAGCACATCTGTCCcgcagaactggcagaaaatgagacagtccaaggagtactgcttgtaactccaggatgttgatatggagggcccgtgcgggctccgtccacctgcctcggactccatgtccgtcacagactgctccccaaccctgcttggaggcgtctgtcgtcatgactgctcggtggtaaac

Function

GO:

id name namespace
GO:0097190 apoptotic signaling pathway biological_process
GO:0097193 intrinsic apoptotic signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49699 True 228 lncRNA 0.57 1 8268994 8269221

Neighbor

gene id symbol gene type direction distance location
AMCG00012785 LOC103366393,LOC100698773,LOC102312910,LOC101485159,LOC102205266 coding upstream 191847 8041802 ~ 8077147 (+)
AMCG00012786 NA coding upstream 234595 8034094 ~ 8034399 (+)
AMCG00012778 NA coding upstream 310019 7936380 ~ 7958975 (+)
AMCG00012777 NA coding upstream 404164 7862259 ~ 7864830 (+)
AMCG00012775 NA coding upstream 436206 7821972 ~ 7832788 (+)
AMCG00012798 NA coding downstream 173183 8442404 ~ 8443642 (+)
AMCG00012807 NA coding downstream 302237 8571458 ~ 8607377 (+)
AMCG00012811 LOC106584661,LOC105006114,LOC108420373,LOC107716646 coding downstream 525947 8795168 ~ 8799438 (+)
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding downstream 554276 8823497 ~ 8844351 (+)
AMCG00012815 NA coding downstream 584860 8854081 ~ 8872158 (+)
G39776 NA non-coding upstream 136430 8057019 ~ 8132564 (+)
G39737 NA non-coding upstream 359828 7906257 ~ 7909166 (+)
G39669 NA non-coding upstream 533726 7714497 ~ 7735268 (+)
G39668 NA non-coding upstream 555751 7708867 ~ 7713243 (+)
G39586 NA non-coding upstream 1050535 7213745 ~ 7218459 (+)
G39951 NA non-coding downstream 397533 8666754 ~ 8667464 (+)
G40022 NA non-coding downstream 781866 9051087 ~ 9053819 (+)
G40041 NA non-coding downstream 822093 9091314 ~ 9093846 (+)
G40119 NA non-coding downstream 995657 9264878 ~ 9265093 (+)
G40121 NA non-coding downstream 1025110 9294331 ~ 9294642 (+)
G39709 LOC101154678 other upstream 432780 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 541166 7725488 ~ 7727828 (+)
AMCG00012763 NA other upstream 887435 7344450 ~ 7381559 (+)
AMCG00012748 itpr2,LOC100196824 other upstream 1751011 6476249 ~ 6517983 (+)
AMCG00012734 NA other upstream 2212162 6053148 ~ 6056832 (+)
AMCG00012797 NA other downstream 66677 8335898 ~ 8345855 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other downstream 267012 8536233 ~ 8569891 (+)
AMCG00012818 NA other downstream 814441 9083662 ~ 9085700 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 843239 9112460 ~ 9130211 (+)
G40224 NA other downstream 2167686 10436907 ~ 10444447 (+)

Expression


Co-expression Network