G39951


Basic Information

Item Value
gene id G39951
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8666754 ~ 8667464 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49822
tatttttttatttatttttttagcttttttatatttttagctttttaatttttaaatctggTGAATAGATAGTTTGTTCCTACTGGTCACTATTCCTTTACAGGGAAGACCCAATGTAAAGtggaatgtttatttaattttttttaatgtttcattttttttatcatcattattattattttccctccTTTCAAAGGGAGGACACATCTTTAAGTGCAGAGGTCCCTATATGTATTCCAAATTATGCACACTTCTGGGTtcttaaaccaaacaaaacaaactcagaTGAGACACAAcagttgaagtaaaaaaaaataaaaaaaataaaataaaaataataatcataatatatttttttttaatccaagaTACGGGCTTCTGCAAAATCTAgcacttaaaatataaatattcctTGGTGACAGAAGAACTTCCAAAAAACGTTTGAAGTCAAAATGAAGACGTGAAATAAAAGAATGCATAAGAgacagttttctttcttctgcgGTGGAATGCTGGGTAATAGCGATCAGGGATGTTGGGAACAGACTGGGCTGGACAAACTATTTATAGGGCCGTAGAAATCTGGATACTTTAGACCGCAGCAGCTTAATGAAGGACCTCGGAAACATTTCCTTGGACTCCTGCACTGTGTACTTGAAGTAATTTTGAGGATGAGCCAATACATCAAAAAGTGCTTTGATCAGTTTTTTG

Function

NR:

description
PREDICTED: regulator of G-protein signaling 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49822 True 711 lncRNA 0.32 1 8666754 8667464

Neighbor

gene id symbol gene type direction distance location
AMCG00012807 NA coding upstream 59377 8571458 ~ 8607377 (+)
AMCG00012798 NA coding upstream 223112 8442404 ~ 8443642 (+)
AMCG00012785 LOC103366393,LOC100698773,LOC102312910,LOC101485159,LOC102205266 coding upstream 589607 8041802 ~ 8077147 (+)
AMCG00012786 NA coding upstream 632355 8034094 ~ 8034399 (+)
AMCG00012778 NA coding upstream 707779 7936380 ~ 7958975 (+)
AMCG00012811 LOC106584661,LOC105006114,LOC108420373,LOC107716646 coding downstream 127704 8795168 ~ 8799438 (+)
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding downstream 156033 8823497 ~ 8844351 (+)
AMCG00012815 NA coding downstream 186617 8854081 ~ 8872158 (+)
AMCG00012817 nfyb,LOC106561000,LOC107658836,LOC107656315,LOC107592261,LOC107743639,LOC107696291 coding downstream 371858 9039322 ~ 9043541 (+)
AMCG00012816 NA coding downstream 396853 9064317 ~ 9077901 (+)
G39838 NA non-coding upstream 397533 8268994 ~ 8269221 (+)
G39776 NA non-coding upstream 534190 8057019 ~ 8132564 (+)
G39737 NA non-coding upstream 757588 7906257 ~ 7909166 (+)
G39669 NA non-coding upstream 931486 7714497 ~ 7735268 (+)
G39668 NA non-coding upstream 953511 7708867 ~ 7713243 (+)
G40022 NA non-coding downstream 383623 9051087 ~ 9053819 (+)
G40041 NA non-coding downstream 423850 9091314 ~ 9093846 (+)
G40119 NA non-coding downstream 597414 9264878 ~ 9265093 (+)
G40121 NA non-coding downstream 626867 9294331 ~ 9294642 (+)
G40145 NA non-coding downstream 806081 9473545 ~ 9473868 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 96863 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 320899 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 830540 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 938926 7725488 ~ 7727828 (+)
AMCG00012763 NA other upstream 1285195 7344450 ~ 7381559 (+)
AMCG00012818 NA other downstream 416198 9083662 ~ 9085700 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 444996 9112460 ~ 9130211 (+)
G40224 NA other downstream 1769443 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 1873264 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 3785775 12453239 ~ 12500402 (+)

Expression


Co-expression Network