G40022


Basic Information

Item Value
gene id G40022
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9051087 ~ 9053819 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49901
CTTCAGTTAAGTGATAAAACAGTAGAGGAAATTATATTGCTAATCAAAAAAGTGACACAGCTgacatgcaaaacatttttaattaaacaatttaggCTATTACATGGTTCAAGATTTCTTGCTCAACTAAGACAAcgaaatctgtattttaatagaTGGAAATATGCAGTCAAATtagATTATTCAACAAAATACTGAGCAACAGTTACAGGCTGTATGGTACCGTTACTTATTATAATTAGAGTGGAGGGTAATACAGAAATCTAACACTTGGATCTTTTACAGCTGAATTCACAGATTAGTGCTAGTCGTCTTGGACTTgctaaaataacattgcataGTCTAAGGAAATTACCAATCATGGTTTGTAAAACCAGACCACTGAATGATACATAATCCCTATGTATGTTTTCCTTAGTTTCTTCCTATAGAAGTCCATATAGTAATTATAGATCAAATATGAAGTCAAGAAATGTTCCAGAAATTTAGAAATGCGAGTCACCAAGCTACACAAGATCAGAGAAAAAATGCAGCATGTTGGATTTAAATAATTGGATTTACTGTTGTCATGATCAACATTTACAGATTATTCCTCttacaagaaaatgtgaacatggGACATTTTTGAAAATTGTGAAATTCAATATCATAGAATATaccaatataatattaaattagaaGTAATTTAATGCACCAACCTCCAGTTTATATACGGTGTAATATTTGTGTTCTACTTTCACTAATGTAGATCTGCAAAGCACAAGTTCAAATTTCCTTCGATGATTTCACAGATACTAAAATTGACACTATTTCCCCCATTTGATCAGTTTCAGTTTGTATACaaataccatttaaataaaGCGTGGGTTTTACCCACTGTAGCAAATAAAAGGATTTCAGACATTGCAGTGAAATATCAGGATAATGTCTTGCAGCACCTgtagtaatacattaaattgacTGAAAATGCATCCACTTTAAAAGGCAAAAGGTAGGTAATGTCAGAAGTATCAACTTTCTACTTTACATTATTCAGACTGATTAAAAGCCTTGAGcaccatttttattaatgaaagtAGAAAACATTTAAGTAACTTCAAAGACACCCAGTGAAATTGGcaacaaataaacattaggcTACATGTTTACGGTCTGTGCTAGTAAGTGTAACATACTTGCATTAAGATAGTTGCATTTTTTACACAAACTATATTTTTATACCCTCCTTTCTAAAAGGAACATCACTAATAACATACATTTGCTGTGACTAATCCTAGGAATAACAATCATATTTGCAGTTTGCTTTCTCCCATATACATGTAAAAAGCGGTAGATTGTTTGAACCActaaactgttttaatttgtctgtttttcgtttttttcgCTCTAAAAGCCATATGCCAATACAGTATCTTTAGACAGAAAATTCTCAATTCTCATTATTTATCAAACCAGAAAGTCAGGTTACTCCAATTCCCTATAAATCTTGTAGATCTATagttatgaaatgtaaattaacGATAAGCAAACCAGTATTCCATATGACACACCACTCTTTAACTTAAATTTGAAGGGGATAAGAAATTATTTCAGATGCCTGAAGCATCAATTCCCCATCCCCACAGCTCACTGCAACATCAATTCTAAACTGTAGTCgatttttaaattaacctgTTTTCCAAGCCCAGCATCAGCCTTCTTGTAGTAGCCAAGACACAATATAGGCTGTACCGATACAGTTTCTGATGTTCTAGTACACCTTTAAAGTCTCTAATCCATTAAACTAACGTGCATTGCTatgcttaaaaaataagaaatactatcctgctatacatttaaaactgaaaatctgaTTCTCTGCAAGACCTATTTAGCTTTCATGATGCAGCCTCCACTGAAATCCTCCCCTCATTCAAACTAACATTCAGTACTACAATGCCGAGTTTAAAGTGCTCTAATGCCAATCACAATAATCcaagtcattttcatttcaaaacagacacaatgcATACATAACACTAGAGGTTGACTAGGACTGTCCTACTTGCTGCGACAGAAAGAAAGGTCAGAATTTGAGACATATTGCACTCACACATGATTACAATGCACATGCAGCAAAATTAACCTTTTAAATATCACACTTTGTAATCACAgaactacacacacatacattacagACTACAAACACTTTTCAGGTAAGATTCATGATCTTAGTGGTACCCTTCTTTGAGATCTACATCATGAATGTCCAACTGTATATTTAATCCAACCAATCTCATCAGAAGGTGTCCAATTTCATATGTTCACTGGGTGCATCTACCCTTAGGTGGGGAGTAGATGTTAGGTAGGGGATTTAATCTGTATCGATACAGCCCAGCTAAAGTTACATACACTTGAACGCAAATATTAACCAAacccccaaaaatatatatattaaaaaaaaaaaaagtggtttacATTATTAACTGCAACACTGGTTCAAAActggtaaaaaatatatgtatatatgtacaaaaacaaatataaaaaaataagtaaaaaactATCCGAATTGTTTTACAGCATGTAAGTGGCTCTCTTAAAATATTCTCAAGACAGTTTCTGGGGACTTCACGTCTCGGTGTTAATCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49901 True 2631 lncRNA 0.33 2 9051087 9053819

Neighbor

gene id symbol gene type direction distance location
AMCG00012817 nfyb,LOC106561000,LOC107658836,LOC107656315,LOC107592261,LOC107743639,LOC107696291 coding upstream 7546 9039322 ~ 9043541 (+)
AMCG00012815 NA coding upstream 178929 8854081 ~ 8872158 (+)
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding upstream 206736 8823497 ~ 8844351 (+)
AMCG00012811 LOC106584661,LOC105006114,LOC108420373,LOC107716646 coding upstream 251649 8795168 ~ 8799438 (+)
AMCG00012807 NA coding upstream 443710 8571458 ~ 8607377 (+)
AMCG00012816 NA coding downstream 10498 9064317 ~ 9077901 (+)
AMCG00012819 NA coding downstream 41593 9095412 ~ 9111776 (+)
AMCG00012828 btg1,LOC106609569 coding downstream 197375 9251194 ~ 9254555 (+)
AMCG00012832 NA coding downstream 321348 9375167 ~ 9382501 (+)
AMCG00012833 NA coding downstream 358507 9412326 ~ 9469248 (+)
G39951 NA non-coding upstream 383623 8666754 ~ 8667464 (+)
G39838 NA non-coding upstream 781866 8268994 ~ 8269221 (+)
G39776 NA non-coding upstream 918523 8057019 ~ 8132564 (+)
G39737 NA non-coding upstream 1141921 7906257 ~ 7909166 (+)
G39669 NA non-coding upstream 1315819 7714497 ~ 7735268 (+)
G40041 NA non-coding downstream 37495 9091314 ~ 9093846 (+)
G40119 NA non-coding downstream 211059 9264878 ~ 9265093 (+)
G40121 NA non-coding downstream 240512 9294331 ~ 9294642 (+)
G40145 NA non-coding downstream 419726 9473545 ~ 9473868 (+)
G40146 NA non-coding downstream 420154 9473973 ~ 9474220 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 481196 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 705232 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 1214873 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 1323259 7725488 ~ 7727828 (+)
AMCG00012763 NA other upstream 1669528 7344450 ~ 7381559 (+)
AMCG00012818 NA other downstream 29843 9083662 ~ 9085700 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 58641 9112460 ~ 9130211 (+)
G40224 NA other downstream 1383088 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 1486909 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 3399420 12453239 ~ 12500402 (+)

Expression


Co-expression Network