G40039


Basic Information

Item Value
gene id G40039
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9083660 ~ 9085793 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU49922
TCCAAAAAATATTCtttattagcatttaaaaaacaactttgcaaTATATTAATCTTGACACTACACaattctcccccccccccccccccccccccccccccaccaaaaaaaaccaaaacattccCACAATCCATCCCAAAAGTGTCAtctatttttcattgtttctgtgaATTTGGTTCATGTCTGGCCTTTATGCCCAGGAGTTCTGTTCTTAGTTCTCCGGGTTTGGGAGGAGTTTCAGGAATtgaAGATCCGGTCTGTAGTATTGGTGTACAACTTCAGCTCCAGCAAACATGGCTATAATACTAGCTCCAAACATACTGAGGTACCGGGGCCAAGACACACCAGCTGGCATTTCCAGATAGGATGTATCACTGTTTTGGTGGTAattcttgtggttttctttccccctcAAACCATTGACATTGTGGTTCCACAGAACTCTACGGCCATTTCCGTACAGTGTGCCCCACTAAAGCGACCCCCACTGCACTTGCCAAAGTAACTTTAGTTCCGTTATCATATTGAAGTGTACTATTCTAGTATAACAAAAAGCTGTGGGGATTTGTCACGTCGAGAAACAGATGGGGACAAAAACacgtttatgtatttatcttctgCCCGGTGAACTTTACTTAATTAAGTCAGTAATCCTGATCATTGAAATACAGTTTATCTGATTAGATACACTCGTTATATGTTAAATCCTATTTACCAATAAAAATGAACGAATAAAGCcgctttcatttattttcatttctaaatgAGCTGTAAACAGCAACAGAACTATATTTGTTATCgtttaagaagaagaaaaaaatatatatcttccCAATGGTGTCTGTGTGGCCACTGAACAGAGCGGACTGCAGTGCCGAGACACGTGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49922 True 889 lncRNA 0.41 3 9083660 9085793

Neighbor

gene id symbol gene type direction distance location
AMCG00012824 NA coding downstream 329 9077888 ~ 9083331 (-)
AMCG00012822 NA coding downstream 21335 9051577 ~ 9062325 (-)
AMCG00012825 NA coding downstream 52310 9013361 ~ 9031350 (-)
AMCG00012827 NA coding downstream 116048 8915063 ~ 8967612 (-)
AMCG00012823 chst11,LOC106609345,LOC106576221 coding downstream 175997 8906842 ~ 8907663 (-)
AMCG00012826 hsp90b1,LOC107656288,LOC106609356 coding upstream 1225 9087018 ~ 9093930 (-)
AMCG00012830 NA coding upstream 66763 9152556 ~ 9170975 (-)
AMCG00012831 NA coding upstream 85473 9171266 ~ 9250923 (-)
AMCG00012837 LOC108442864,LOC103033525,LOC108263937,LOC107594935,LOC107738417,LOC107559378,LOC107672593 coding upstream 795043 9880836 ~ 9882770 (-)
AMCG00012840 NA coding upstream 1337584 10423377 ~ 10436550 (-)
G40008 NA non-coding downstream 182179 8900113 ~ 8901481 (-)
G39952 NA non-coding downstream 416636 8660448 ~ 8667024 (-)
G39929 NA non-coding downstream 513771 8568052 ~ 8569889 (-)
G39839 NA non-coding downstream 814439 8268994 ~ 8269221 (-)
G39707 NA non-coding downstream 1255513 7827278 ~ 7828147 (-)
G40115 NA non-coding upstream 151107 9236900 ~ 9257451 (-)
G40172 NA non-coding upstream 601017 9686810 ~ 9690911 (-)
G40206 LOC101154678 non-coding upstream 1139901 10225694 ~ 10225957 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding upstream 1463864 10549657 ~ 10551377 (-)
G40323 NA non-coding upstream 1642702 10728495 ~ 10728820 (-)
AMCG00012782 NA other downstream 1179205 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 2387736 6638480 ~ 6695924 (-)
G39487 NA other downstream 2627482 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 3019843 6052364 ~ 6063817 (-)
G38490 NA other downstream 6899497 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 26648 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 1654561 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 1772088 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3154603 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 3810727 12896520 ~ 12906333 (-)

Expression


Co-expression Network