G40172


Basic Information

Item Value
gene id G40172
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9686810 ~ 9690911 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50084
gattataaacatgttttttttctgtttaataacattattattgtacaaATTTTATACAAAAATCGATTCAGGCTTGTCAAGTTCCACAAAAGTGTAATGTATTAAAGCACAATCAAGGGAGATTAAGAGTGGCCGGTTAGTTGCCTGCACATCGCAGTGAAGGGGCCCTCCAATTAAACACACATCAAGCAATCTCAAGAAAACAGTCCAGAAAAAGCATGACCCAGACAATCTGCACAAAGAGCATTGACAGCATTAAAAACACTTCCAATTACATCGCAATATCTGATCCTGAAGAGACAGCATCTGGATTAGGTGAGTATCAGAATGAAAATGCCTTCAATCTAGGTTATACTTTATATCTATTTTAACACCATTTCCCAAAAgctccatttcattttctgaaaactTTCACTAACTTTGTATTCATTACCATAGCtgcattttttccctttcttgtcATTCAAGTACATAGTAACAAATAGTAAAGACACACCATTTATGCAAATAGTTTGAGCTTTAATGATGTTTCCACTTTTCAAGGATTAGTTTCACTTGCATAATGATTTTTCCCCCCCCATAAATACCAACCTAAAAATCAAATGCTGTCTCTCAGGAAAACGGCAGTAGTGCTGATCGATAGTCAAAAACAAAGGCTTCAATATTCACTGTATTATACTTTTGCAAATTTAATACCTAAATAGGAGTATAAAGATTATATTCTCATTGTCTGTCACTGGTGTTAAGCCATGCAGCCAGGGCGTAATGTCATCAAAATATGCCTTTATGTTGGACCCGTGACTCCTccttacatttcattttctattttaggTTTCCATACACAGATCTCTGAAAAATCCTATGGCACATAATTGAGATACTTTAGAAAATATATGATGGTAGGATCACTTGATGATGACAGGATGACTTAttctataaatgtatgttttgctgGAACATCGCCTAAGGACAGCTAGTCAtaagtaataaagtaataaataactgaaaaaaaagtgATGGGTTGTCTGTCTGATGGTGATGGAATatcttataaaaataatttacttacTGAGAATTTTTAAGGTATTTCAGGGGAGACCTGGATCTCTGAAGTGCATGTAATGAAATCAAGTTTCAATTGCACCCCACATGCAACATTTTCCATTGTACTCAACTATTCCCTGAACTGAAacttttctgtaaatgttgAAGATTAATTTGCAGTATTGACTAGCAAGTTAGTCAGACACCATCATTGACAAATACCAATGAAAATGTTACCGAAAAAAGTCAACCGAAATGTTTATGAATGATACACTTTGAAAGTCACATGACAAAACTGTTTTCaggtttaaagttaaaaaaacagttgTTTCAAACTCGAAAGTACAATGTTAAGTACGGAAGTGCAAAATTCAAATGCATGTGATGGGGCAATCTTTTTAATTATGGACCATAAACTGTTTCTACTGATTAAAAGTCAGCTTATATTACACTTTTGCAATTCTGCGTCAAATCGTTACAAAGATATGCTAGAAAATGGCATTTAATGTCTTGGATTGTACACTAATTATGAATGGCATTCAAAATGCTCATATAATAGACCATAAACCAcaacaagtacattttaaaacaggaagGAGTTACTTGCTGGTTTGAGGTGGTATCTATGACAACATGAGCTGTCACTGAGGTTCAGACCAAATCgaaactttgacccatctgcCAGTCACAAATCATGTCAAATACCTGATGACTGTTTGACGGATACTTTCttctacatatttatatatgtaattggCTGGTGGGTCAAAGTGTTGATTTGGATTGGCCTGGCTATAAAAAGACTGCCCATTAAAATGTCTATGCATCCAAAACCTAAAGCGATGTTAGATAAttgtacatctttaaaaaaaaaaccaatctTATAAAACCCTTGTAGATGGAGTTTTGTCAATCACTTTGTGACATATttatgtgaatGTTAATGGATAAAACACTGGAGAATCATCTAGTGATTATATTGGTACGTAAGAAAAAGAGTAATTTCCTTTATGAATGGACGAGatcattcaaaattaaatagcGGCAGTCAAGTTAAAGTCTTTCAAGCTTTGCAAATGAAATAGAGTATGGGTCTATGGGTTGAACGCTAATCGAgtgtgagttttattttttgatttttagatttttgatttgattttcatCAGTGATTGCACATTCGAAATGCCAATAAACCAGTAAGCGAGATTTATGAACAACAGATAGAGACCGGTCACTCAAGATGAGAACATGTTGTGTGAACAGCAATGACACTTTAGGTGTGTTTAGTCTTAAAGAAAGGTATTTCATTCCTGTTGTAGTTTTGAACAGTACTTAAACTGGTGTTGATGTGCAACAAAATAATGCTTTTGTATGTTGTTGCTTTCTCTAGAAAATGTTgctctgtgttgtttgttttcattcctctttttcttattagtATCAACACACCTCTTATTTAAGCCcagcaaaatgtaatatttatatttgattggTGTCagaattgaaaaatattttcacaaatatgGTAAATTCACAATCTCTTCACTAATCACTGCAAACAAGCTGAGCCAATAGAAGAAGGGCTTGCACCTCCTCCTGAAAATGGAAGGTTTTACACATACAGTAGAATCTGCTTGCAAAGGTAGAATGTTGTCTCTCTTTGTGCACAGGAAATTATACAGCTACTTGCACAAAAGAAAGCAAGACATACACAAGATGTATGTACTCGTCACTTCTCAAATGTCATTTTCAACCTAGCAGTCCTTTTGCGAGAACAAGATTTACAATCAAAAcaagtgcaaataaaataaaaaaaactaaaaaagcagaatcatgcaaaaaaaaataaaacattgtagcccaaaaaataacaagaaagaaaatgaatatcaGAACAAGCATAGCATTATAAAAAGGTTTGGCTAACTCTCTATATGTAGGTTGTATTGCAAATAATTGACATATGCCAATGCAGCAGAAGAAGAGATGGATGTATCCCCTTTGGCATGATTAAACAAGACAGACCTTTTAGGATCTTTCATAGTTGtcactgatgtatttttttcttgtgatcTTATCTGAAATCTAAAACTCAAGAGTGAATACGATGTTTGAAATAGTCAATATCACTGGTTTAAATGCTTGATGAGGTGAGAAAAATGCCTATGACAGTCAGtcattttcatttctatttctttcaaacagaaatacatatttaattatctcTGGAAATGTGGGAGGTCAGTcagtgaaaatgtgaatgaaCTTCATATGGTTTGATTAgataattttcattaaaaaaaaaaacgcaagaCTTGATCCGGACAAATCATTAGCACCCGTAATATGTAAATGAGCAATACAACCAAGAGAATGTGGCGTCACCTCACTATTTAACACAGctttgcacattaaaaaaaagaataaaaatccTTCCGACTGCAGTGCACCGTAAAGCATGTTTTAACTCACACAGTGGCTCGATAGTGAGACATGCCAAAcccttcaaaataaacaatcaagCCAACACAAAATACTAAGAAACAATGGCTAGGGGCAACACTTCATGAATTTCAGTAGTCATGAATTTCAAATGTCTGGCAGTATAAGTTTTTGACAGAGAAGCTCACCGACAAACCACAACATTACATGGAGTTGCTTTTCCCCTCACGTTTCCAGGAAAGGGTCAGACAGTTCACAGCGCCGTCTTTTGTGGGAACATTCGGCTTCTGATGGTTCAATCTTCATTTTCGGGGATTTCATCAAGCTTCCCCAGACTGGGTTAGACCTAGACGTGGATAGAACCAGTCTTTTTGCTTCCTGGGTTGGGCGAAtttgagttttttcttttccccatcgatgtataattttcagaaacaaaatttGGCAGGatcttgaaatgtatgcagtattGGGCTCAGTTATTGTTTCTGAGGTCATGACGGGTAATGTTTTGATCCAGTTAGGAGCCAAAGTAGCACAAGCTGTATTCCTACCATGGGCCACAGTGACGGGCTCAAACCAGAGACCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50084 True 4077 lncRNA 0.35 2 9686810 9690911

Neighbor

gene id symbol gene type direction distance location
AMCG00012831 NA coding downstream 435887 9171266 ~ 9250923 (-)
AMCG00012830 NA coding downstream 515835 9152556 ~ 9170975 (-)
AMCG00012826 hsp90b1,LOC107656288,LOC106609356 coding downstream 592880 9087018 ~ 9093930 (-)
AMCG00012824 NA coding downstream 603479 9077888 ~ 9083331 (-)
AMCG00012822 NA coding downstream 624485 9051577 ~ 9062325 (-)
AMCG00012837 LOC108442864,LOC103033525,LOC108263937,LOC107594935,LOC107738417,LOC107559378,LOC107672593 coding upstream 189925 9880836 ~ 9882770 (-)
AMCG00012840 NA coding upstream 732466 10423377 ~ 10436550 (-)
AMCG00012842 NA coding upstream 746410 10437321 ~ 10441546 (-)
AMCG00012841 NA coding upstream 753180 10444091 ~ 10489781 (-)
AMCG00012845 impdh1,LOC108442450,LOC107559456,LOC107665545,LOC106561215,LOC107710381 coding upstream 802451 10493362 ~ 10525888 (-)
G40115 NA non-coding downstream 429359 9236900 ~ 9257451 (-)
G40039 NA non-coding downstream 601017 9083660 ~ 9085793 (-)
G40008 NA non-coding downstream 785329 8900113 ~ 8901481 (-)
G39952 NA non-coding downstream 1019786 8660448 ~ 8667024 (-)
G39929 NA non-coding downstream 1116921 8568052 ~ 8569889 (-)
G40206 LOC101154678 non-coding upstream 534783 10225694 ~ 10225957 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding upstream 858746 10549657 ~ 10551377 (-)
G40323 NA non-coding upstream 1037584 10728495 ~ 10728820 (-)
G40325 NA non-coding upstream 1047071 10737982 ~ 10738597 (-)
G40326 NA non-coding upstream 1048174 10739085 ~ 10739378 (-)
AMCG00012829 NA other downstream 534405 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 1782355 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 2990886 6638480 ~ 6695924 (-)
G39487 NA other downstream 3230632 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 3622993 6052364 ~ 6063817 (-)
AMCG00012858 NA other upstream 1049443 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 1166970 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 2549485 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 3205609 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 3423982 13114893 ~ 13115487 (-)

Expression


Co-expression Network