G40224


Basic Information

Item Value
gene id G40224
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10436907 ~ 10444447 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50138
ccctttttaaaatattttattaaggaaattatacatgttaattttaatgaatgaatgataaTTCACAAATTATGTTATACAAGCACACAACCTTCACATAACTCATAACACATAAATACAGACAGTATAAATGATATCCAGttagttttgtatattttttttccattgacCATACTCCTCAGTTCTGAggaacacattaaaacaaactgaacaatgtttaaaatccGCTTTCAAAATACGTTCAATTTCTTAAACACATTGTTGTTCTTAAAAATAGTTGACTTCCTGGTGAatgattcaaataaaaaacaaagaacaaaggcCTTGGTGACTGTGTGTAATTCACAAGGCTTTATATAAAGGCACTCATTTCAACACATTGGTCTTTGTAGgatgttaataaataagtactgttcacaattttgcttttaaacCAAAAAGGTTGAGAGACTGTACAAAGTTATGTAGTGTCGTCAGGTAGTCTTCAGGGTGCTCCCTTAGATGGCCAGCATGAATGGACTCCTTCCAGCGCTTCTTCCCCACACTGATGCCCTGTGTCTGCCAGTGCCCAGTCAGTTTCTCTACCTCTTCACTGTCACTGAGTGGATCATTGTCACAGAAGAAGAACAGCGCTGGGGCTTTGACAGGTGTGTTCCAGAAGACATTGATGCTGTCATTGTAGTAATCGACAGTATACTTCTTGAAGACCCTAAAATACAGGAGACTGACTCCCTGGAACAGTCCCTGCAGTCGAGGGAAAAAAACCCTTCC
>TU50139
ccctttttaaaatattttattaaggaaattatacatgttaattttaatgaatgaatgataaTTCACAAATTATGTTATACAAGCACACAACCTTCACATAACTCATAACACATAAATACAGACAGTATAAATGATATCCAGttagttttgtatattttttttccattgacCATACTCCTCAGTTCTGAggaacacattaaaacaaactgaacaatgtttaaaatccGCTTTCAAAATACGTTCAATTTCTTAAACACATTGTTGTTCTTAAAAATAGTTGACTTCCTGGTGAatgattcaaataaaaaacaaagaacaaaggcCTTGGTGACTGTGTGTAATTCACAAGGCTTTATATAAAGGCACTCATTTCAACACATTGGTCTTTGTAGgatgttaataaataagtactgttcacaattttgcttttaaacCAAAAAGGTTGAGAGACTGTACAAAGTTATGTAGTGTCGTCAGGTAGTCTTCAGGGTGCTCCCTTAGATGGCCAGCATGAATGGACTCCTTCCAGCGCTTCTTCCCCACACTGATGCCCTGTGTCTGCCAGTGCCCAGTCAGTTTCTCTACCTCTTCACTGTCACTGAGTGGATCATTGTCACAGAAGAAGAACAGCGCTGGGGCTTTGACAGGTGTGTTCCAGAAGACATTGATGCTGTCATTGTAGTAATCGACAGTATACTTCTTGAAGACCCTAAAATACAGGAGACTGACTCCCTGGAACAGTCCCTGCAGTCGAGGGAAAAAAACCCTTCC
>TU50140
ccctttttaaaatattttattaaggaaattatacatgttaattttaatgaatgaatgataaTTCACAAATTATGTTATACAAGCACACAACCTTCACATAACTCATAACACATAAATACAGACAGTATAAATGATATCCAGttagttttgtatattttttttccattgacCATACTCCTCAGTTCTGAggaacacattaaaacaaactgaacaatgtttaaaatccGCTTTCAAAATACGTTCAATTTCTTAAACACATTGTTGTTCTTAAAAATAGTTGACTTCCTGGTGAatgattcaaataaaaaacaaagaacaaaggcCTTGGTGACTGTGTGTAATTCACAAGGCTTTATATAAAGGCACTCATTTCAACACATTGGTCTTTGTAGgatgttaataaataagtactgttcacaattttgcttttaaacCAAAAAGGTTGAGAGACTGTACAAAGTTATGTAGTGTCGTCAGGTAGTCTTCAGGGTGCTCCCTTAGATGGCCAGCATGAATGGACTCCTTCCAGCGCTTCTTCCCCACACTGATGCCCTGTGTCTGCCAGTGCCCAGTCAGTTTCTCTACCTCTTCACTGTCACTGAGTGGATCATTGTCACAGAAGAAGAACAGCGCTGGGGCTTTGACAGGTGTGTTCCAGAAGACATTGATGCTGTCATTGTAGTAATCGACAGTATACTTCTTGAAGACCCTAAAATACAGGAGACTGACTCCCTGGAACAGTCCCTGCAGTCGAGGGAAAAAAACCCTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50138 True 771 TUCP 0.37 2 10436907 10444447
TU50139 False 771 TUCP 0.37 2 10436907 10444447
TU50140 False 771 TUCP 0.37 2 10436907 10444447

Neighbor

gene id symbol gene type direction distance location
AMCG00012839 NA coding upstream 26626 10409327 ~ 10410281 (+)
AMCG00012838 snd1,LOC102797100 coding upstream 122657 9883124 ~ 10314250 (+)
AMCG00012836 snd1,LOC107738807 coding upstream 666236 9751636 ~ 9770671 (+)
AMCG00012835 NA coding upstream 712977 9702270 ~ 9723930 (+)
AMCG00012834 NA coding upstream 745568 9634234 ~ 9691339 (+)
AMCG00012843 NA coding downstream 27418 10471865 ~ 10492477 (+)
AMCG00012844 NA coding downstream 87532 10531979 ~ 10534605 (+)
AMCG00012850 calua,LOC108432523 coding downstream 102104 10546551 ~ 10550066 (+)
AMCG00012849 tnpo3,LOC106609131 coding downstream 145751 10590198 ~ 10608349 (+)
AMCG00012859 NA coding downstream 222313 10666760 ~ 10685175 (+)
G40214 NA non-coding upstream 12536 10375031 ~ 10424371 (+)
G40203 NA non-coding upstream 264444 10172254 ~ 10172463 (+)
G40146 NA non-coding upstream 962687 9473973 ~ 9474220 (+)
G40145 NA non-coding upstream 963039 9473545 ~ 9473868 (+)
G40121 NA non-coding upstream 1142265 9294331 ~ 9294642 (+)
G40303 NA non-coding downstream 295985 10740432 ~ 10743104 (+)
G40436 NA non-coding downstream 659378 11103825 ~ 11159087 (+)
G40496 LOC103376870 non-coding downstream 849770 11294217 ~ 11354359 (+)
G40498 NA non-coding downstream 960558 11405005 ~ 11405356 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding downstream 1021774 11466221 ~ 11468218 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 1306696 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 1351207 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 1867016 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 2091052 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 2600693 7835346 ~ 7836214 (+)
AMCG00012848 NA other downstream 96281 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 2008792 12453239 ~ 12500402 (+)
G40629 NA other downstream 2044128 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 3983866 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 4072336 14516783 ~ 14529806 (+)

Expression


Co-expression Network