G40436


Basic Information

Item Value
gene id G40436
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11103825 ~ 11159087 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50385
caccaacacacacattcattgaaattaataatttatttggtttataaaAGGCATTGTGACTTACAATACTCGTGAACATTATATTCTTTACAGATAAACTTTAAAGATAAACTTCCACTGTAATATACACACCTGACTGATAAGAGCATTTGATCTTGGAGTCTTATGTTAAGCTATTTGGCTTTATAGCACTAGCTTTAATATTAGCatgattacaaaatgtaaaattaaatgagtagttatacaaaataagaaagcaCAGCAATCTGTTTTGTATTAGTCTACCAAGATAAACTGACTTTAACTCAGAGAAAAACTAGGCCAAAAAATAACTGTCCAATTTGGGAAGTCTTCCTACTCTTATAGCAAACTGGTGTGCAGTTtattcacattgaaatacaaaaataaaatggtacaaATATAAAGTCAAATCATTCCCCCTTGTTAATTTGCACAAAATAATACCCTTCTTCCCCATGTGGACCTGAGTACTAATAATGTGAGCTCTGCAGACATTGTACCTTGGGTGAACaataatttttaattgttaattgtatttatcaagTTAGTAGCcattacctttatttttttcatatatcCCCAACAGATGCAACAAGTATCATTCTGGCTTACAAGATGTTCTTGTTGAGATTTCATAGTTAGCTACTATAAACACCCATGCACTGCAAAATTGCCATGAATGTTTCATCAGGTGTCATTGCCACAGATCCAACTTAAAATAATGCTGcaatcaaaaaacaacacatactCGCAGCAAACCGGCAACCTAACGTAGGCATAACATTTCCTGGCCATGTTCACACCCTACAGACATTTTACTGATGCTTATTATCCGAGAGCTCAGTTTTGTACCAACCTGTGTTTgttatattcttattattcaaaCTCAGACTACTTGGTACTCTTTAAATGGCATAGCAGATCAGTTGCAGAACAAACATTACAGTTTAAAGGCTTGAGGAtctcagaaaaaaatgaaataataaaattatatatatatatatatatatatatatatatatatacacacacacacacaaacacacatatatcacAATGTAATATCCCTGTATTTGAATGGCTAGGTCCATATTAAAAACTCACATTTTAAGCATGGAGCCTAGAACATTCTGTTTGTGTAGACTCTGTTGGGCCCAATGGTAAGAAAAGATCggttataaaatgtatgttctgtAGGCCACTCATACTAGCAAAAGTATATCAATATTTGTATAGAAATaataccaaatacaaataaataaaattgctgtaaaaacaaaacaactaaaagcAAACACCCTGGTATTATTGTATTCTGCCGCACTCCCTTGTGTCTCTAATTAATTTAGACGGCATacattcagatttttaaatgctattccttaatttgagggtagtcaATGTGCTAGGTCTGTTGATACATGAATaccaaatattttgttttcccaatacagaacaaagaaaacaaaacacaccatGTTGTCCACCCACgtttcattcaaatgtatttgtaaaatcaaCACAGTAACAACAAAAAGATGTCCGAATCTGATCTATAGgaaatactaaatatattaaattatacatcagCATACAGTGGATTCAATATTTACAGTCTTTAACAGAAAACCTCTTCACACATCCATAACCAGCCCATGTCtccaaataatattaataagaacTCAAAGCTGCTCATTCCAGTATTGCACACATTAGCCGCACTTTCACTGACATCAACCACAGTGCCCATGTCAATGAAAATGCTACCTGCTTCAAAACAAGGGAACGAGAAGTTCTTGGTCACAAATGAAAGATTCAACCAAAAAAGGTCGCAATTAATTATCTTAGTGGGATTTGCTTATTGGTGCAAAACCTGGACATTGACAGCTGAGAGACACTTGGCCATGCTTCGGAACACAGGGGTAATAAACATGTCCACCACACTCCTCCAGACAAACTGAACAGAGGGCAGCGCCATCATACAGCTCTTCACTAATGGCATCACGa
>TU50386
atatatatatatatacatatatatatatatatatatatatatatatatatatatacacacacacacacaaacacacatatatcacAATGTAATATCCCTGTATTTGAATGGCTAGGTCCATATTAAAAACTCACATTTTAAGCATGGAGCCTAGAACATTCTGTTTGTGTAGACTCTGTTGGGCCCAATGGTAAGAAAAGATCggttataaaatgtatgttctgtAGGCCACTCATACTAGCAAAAGTATATCAATATTTGTATAGAAATaataccaaatacaaataaataaaattgctgtaaaaacaaaacaactaaaagcAAACACCCTGGTATTATTGTATTCTGCCGCACTCCCTTGTGTCTCTAATTAATTTAGACGGCATacattcagatttttaaatgctattccttaatttgagggtagtcaATGTGCTAGGTCTGTTGATACATGAATaccaaatattttgttttcccaatacagaacaaagaaaacaaaacacaccatGTTGTCCACCCACgtttcattcaaatgtatttgtaaaatcaaCACAGTAACAACAAAAAGATGTCCGAATCTGATCTATAGgaaatactaaatatattaaattatacatcagCATACAGTGGATTCAATATTTACAGTCTTTAACAGAAAACCTCTTCACACATCCATAACCAGCCCATGTCtccaaataatattaataagaacTCAAAGCTGCTCATTCCAGTATTGCACACATTAGCCGCACTTTCACTGACATCAACCACAGTGCCCATGTCAATGAAAATGCTACCTGCTTCAAAACAAGGGAACGAGAAGTTCTTGGTCACAAATGAAAGATTCAACCAAAAAAGGTCGCAATTAATTATCTTAGTGGGATTTGCTTATTGGTGCAAAACCTGGACATTGACAGCTGAGAGACACTTGGCCATGCTTCGGAACACAGGGGTAATAAACATGTCCACCACACTCCTCCAGACAAACTGAACAGAGGGCAGCGCCATCATACAGCTCTTCACTAATGGCATCACGa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50385 True 2028 lncRNA 0.34 2 11157034 11159087
TU50386 False 1037 lncRNA 0.35 3 11103825 11159087

Neighbor

gene id symbol gene type direction distance location
AMCG00012864 NA coding upstream 97246 11000201 ~ 11006579 (+)
AMCG00012865 NA coding upstream 105513 10978883 ~ 10998312 (+)
AMCG00012863 NA coding upstream 156555 10913292 ~ 10947270 (+)
AMCG00012862 cttnbp2,LOC102784586,LOC102201476 coding upstream 221200 10874552 ~ 10882625 (+)
AMCG00012866 NA coding upstream 241525 10825020 ~ 10862300 (+)
AMCG00012871 NA coding downstream 52935 11212022 ~ 11232862 (+)
AMCG00012870 mest coding downstream 84338 11243425 ~ 11248941 (+)
AMCG00012876 NA coding downstream 270879 11429966 ~ 11433519 (+)
AMCG00012884 NA coding downstream 473285 11632372 ~ 11770268 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding downstream 626851 11785938 ~ 11791546 (+)
G40303 NA non-coding upstream 360721 10740432 ~ 10743104 (+)
G40214 NA non-coding upstream 679454 10375031 ~ 10424371 (+)
G40203 NA non-coding upstream 931362 10172254 ~ 10172463 (+)
G40146 NA non-coding upstream 1629605 9473973 ~ 9474220 (+)
G40145 NA non-coding upstream 1629957 9473545 ~ 9473868 (+)
G40496 LOC103376870 non-coding downstream 135130 11294217 ~ 11354359 (+)
G40498 NA non-coding downstream 245918 11405005 ~ 11405356 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding downstream 307134 11466221 ~ 11468218 (+)
G40555 NA non-coding downstream 585509 11744596 ~ 11744795 (+)
G40571 NA non-coding downstream 1035398 12194485 ~ 12194686 (+)
AMCG00012848 NA other upstream 561865 10540728 ~ 10541960 (+)
G40224 NA other upstream 659378 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 1973614 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 2018125 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 2533934 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 1294152 12453239 ~ 12500402 (+)
G40629 NA other downstream 1329488 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 3269226 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 3357696 14516783 ~ 14529806 (+)
G41059 NA other downstream 3473270 14632357 ~ 14633413 (+)

Expression


Co-expression Network