G40496 (LOC103376870)


Basic Information

Item Value
gene id G40496
gene name LOC103376870
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11294217 ~ 11354359 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50464
AGGATCATTAGgaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggcctagAATTTAAA
>TU50466
cacacacacacacaaaaatatatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggcctagAATTTAAA
>TU50467
aaacaatgtacatttcagagttatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggcctagAATTTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50464 False 420 lncRNA 0.45 3 11324623 11354359
TU50466 False 455 lncRNA 0.44 3 11350273 11354359
TU50467 True 456 lncRNA 0.43 3 11294217 11354359

Neighbor

gene id symbol gene type direction distance location
AMCG00012870 mest coding upstream 45276 11243425 ~ 11248941 (+)
AMCG00012871 NA coding upstream 61355 11212022 ~ 11232862 (+)
AMCG00012864 NA coding upstream 287638 11000201 ~ 11006579 (+)
AMCG00012865 NA coding upstream 295905 10978883 ~ 10998312 (+)
AMCG00012863 NA coding upstream 346947 10913292 ~ 10947270 (+)
AMCG00012876 NA coding downstream 75607 11429966 ~ 11433519 (+)
AMCG00012884 NA coding downstream 278013 11632372 ~ 11770268 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding downstream 431579 11785938 ~ 11791546 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding downstream 609000 11963359 ~ 12008431 (+)
AMCG00012886 plxna4,LOC106921988 coding downstream 667107 12021466 ~ 12053113 (+)
G40436 NA non-coding upstream 135130 11103825 ~ 11159087 (+)
G40303 NA non-coding upstream 551113 10740432 ~ 10743104 (+)
G40214 NA non-coding upstream 869846 10375031 ~ 10424371 (+)
G40203 NA non-coding upstream 1121754 10172254 ~ 10172463 (+)
G40146 NA non-coding upstream 1819997 9473973 ~ 9474220 (+)
G40498 NA non-coding downstream 50646 11405005 ~ 11405356 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding downstream 111862 11466221 ~ 11468218 (+)
G40555 NA non-coding downstream 390237 11744596 ~ 11744795 (+)
G40571 NA non-coding downstream 840126 12194485 ~ 12194686 (+)
G40604 NA non-coding downstream 996491 12350850 ~ 12351728 (+)
AMCG00012848 NA other upstream 752257 10540728 ~ 10541960 (+)
G40224 NA other upstream 849770 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 2164006 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 2208517 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 2724326 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 1098880 12453239 ~ 12500402 (+)
G40629 NA other downstream 1134216 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 3073954 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 3162424 14516783 ~ 14529806 (+)
G41059 NA other downstream 3277998 14632357 ~ 14633413 (+)

Expression


Co-expression Network