G40497 (exoc4,LOC107744930,LOC107725510,LOC107585070)


Basic Information

Item Value
gene id G40497
gene name exoc4,LOC107744930,LOC107725510,LOC107585070
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11466221 ~ 11468218 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50468
taatgtagcACAATGGGCACATCAAGCCTTTTCAATTCAGTGTTCAGAGACTGGAGATTTTAAGAGCAGCACTTTGCAGAAATGACTGTTAAAActcaaaacacaaagtaaacagaaatagaaaaaacaaaacaaaaaactaaacagggCATCCCTTTATACagcattgttatttttccattgttgtAGGTCACCTGCCATTGAATATCACATgactttgtttatatatacacacaccttttcaaaatgaatcaCTGGCACtacaaaatgtgaagaaatcAAGGGTGTGTAGACATTCTATAggcactctgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatataaaaaaatataaagaatgaatGTAGCAAAGACATTTTATAGGATGATCTCCATCTTAAATGTAGTAACTCAGTAAATGTCTTTATGCAGACTTAGATAAGAAATATGACTTGTTTGCTTAGACCCATAAATAGAAGATATCAActactgtaataaaaataaaaataaatcccacattacacacacacacacagacaaaatgaGCCTCAGTATGATAAGGCTTTTCCATGCTTATACTTTCCTTTATATACCCCAAGCACCAAAACACCACTACTCAGCAGACGGGGATCACATTTCAGATGCAGTCTGGGATGGCACAGAAGAGCCCTGCGTGGCTTTATTGACCAGGATGTCACTGTGTTTTGAAACTAGCATGAGAATGTTGAATCAACAGCAGATCAGAAAACACTCATTCCCGTACAGGCAATAGAGCTGTATTGATTTCAAACAGCATTTCATTATGATGGATTCTTCTCTACAGTTGTGGGGAACTTGTACAGAATCTTTACTGCCCTGCCTCGCTTTCTGctaatgtgtttacatttagaacattcatttatttaaaaagtaaaaaataaaatattcaaccTTATTGAacttaaaatgtacacatcCCATTCCAAAAGAGATGGAGGAAAGTGTGTTTATTAGTTTACAATTTTAGGGTGGAGGGTCATTTATTAATGAGATAAAAATAATTGGATTTGaagatttgactttttatttattcatttattttgtatccctCATATATTTCAATTGAATTGGAGTTTGCAGAagtattgtatataataataataataataataataataataataatcatcatcatcatcatcatcattattgaGGTTGGATTTGCCCACAAATGATCCATGTTAAACTGTATGCTtcacagtaaagaaaaaaaaatggttacaTAGGAGAAGACATTTCCAGTATTGCTTTTCTCCTGGGTAAAGATTTACAAATTCTTTCCTTGGCAAGATTAATCTAAATGAGTCTTACATATTTTATTCTAGGCATAATCCATAttggagaggaggggggaaacAGAACAAATTAAGTGGCAGGTTAATAATTCAAACGCATGGGCTGatactgaaatgaaagcaatgcCCTTAAagcatttacagtttttctaGAGGCGCTTCAGGTGAGATGAGGTCAAATGAGAAATCTTTACTGTCATGGCAATAATGTTATGGGCTTCCCTCCGCTCACATGAAGTACTTATTAACAGATACACAGGAGTAGACTACTCCTAATATTACAATGGCAGCTGTTTACCCACACCTTTATTGTACAAGCATACTTTGTATGCTATGTATGCTTTGGGCAAGGGGGAGGTAAAGAAGAGATTACACAGTGGTAATTTTCTTGTCTTTAGTAGCCTGTTTGATGGCCGCCTGTTCGCAGATGATTTCCTTGAGACGCTGCAGGCGGGTGTTCTGCACAGTCTGGTCTCCCACCCCGGTCTGGCTGCGGTGTAGCAGGCTCAAGGCGTTGATGTACTCCAGCTCGGTGTATTTCACTCCTTGGTCCACCACCAGGTTGAGCAGCTCGTCAGCGGTGTTGTACAGCATCTCATAGTACT

Function

symbol description
exoc4 Predicted to be involved in Golgi to plasma membrane transport; chemical synaptic transmission; and exocytosis. Predicted to act upstream of or within protein transport; vesicle docking involved in exocytosis; and vesicle tethering involved in exocytosis. Predicted to be part of exocyst. Predicted to be active in growth cone membrane and synapse. Orthologous to human EXOC4 (exocyst complex component 4).

NR:

description
PREDICTED: exocyst complex component 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50468 True 1956 lncRNA 0.36 2 11466221 11468218

Neighbor

gene id symbol gene type direction distance location
AMCG00012876 NA coding upstream 32702 11429966 ~ 11433519 (+)
AMCG00012870 mest coding upstream 217280 11243425 ~ 11248941 (+)
AMCG00012871 NA coding upstream 233359 11212022 ~ 11232862 (+)
AMCG00012864 NA coding upstream 459642 11000201 ~ 11006579 (+)
AMCG00012865 NA coding upstream 467909 10978883 ~ 10998312 (+)
AMCG00012884 NA coding downstream 164154 11632372 ~ 11770268 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding downstream 317720 11785938 ~ 11791546 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding downstream 495141 11963359 ~ 12008431 (+)
AMCG00012886 plxna4,LOC106921988 coding downstream 553248 12021466 ~ 12053113 (+)
AMCG00012885 NA coding downstream 767149 12235367 ~ 12242214 (+)
G40498 NA non-coding upstream 60865 11405005 ~ 11405356 (+)
G40496 LOC103376870 non-coding upstream 111862 11294217 ~ 11354359 (+)
G40436 NA non-coding upstream 307134 11103825 ~ 11159087 (+)
G40303 NA non-coding upstream 723117 10740432 ~ 10743104 (+)
G40214 NA non-coding upstream 1041850 10375031 ~ 10424371 (+)
G40555 NA non-coding downstream 276378 11744596 ~ 11744795 (+)
G40571 NA non-coding downstream 726267 12194485 ~ 12194686 (+)
G40604 NA non-coding downstream 882632 12350850 ~ 12351728 (+)
G40643 NA non-coding downstream 1053245 12521463 ~ 12521819 (+)
G40710 NA non-coding downstream 1272956 12741174 ~ 12742694 (+)
AMCG00012848 NA other upstream 924261 10540728 ~ 10541960 (+)
G40224 NA other upstream 1021774 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 2336010 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 2380521 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 2896330 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 985021 12453239 ~ 12500402 (+)
G40629 NA other downstream 1020357 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 2960095 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 3048565 14516783 ~ 14529806 (+)
G41059 NA other downstream 3164139 14632357 ~ 14633413 (+)

Expression


Co-expression Network