G40555


Basic Information

Item Value
gene id G40555
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11744596 ~ 11744795 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50542
CCCTATTGAATCTCCAGGTGAGTTGGAATGAACCTGCCTTctttatatacaaaattaaaatccacaATTTTTCTTAATATGTGTACTTGTCCTTGTCCTTGGATTATGGAAGTTGAAAATAACAGTACACATTTTGGAATGATTGGACAATTGTTGTGCATTTGTGAGCAGTGCTTTGCAGTCCTAAAACATTGTGACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50542 True 200 lncRNA 0.36 1 11744596 11744795

Neighbor

gene id symbol gene type direction distance location
AMCG00012876 NA coding upstream 311077 11429966 ~ 11433519 (+)
AMCG00012870 mest coding upstream 495655 11243425 ~ 11248941 (+)
AMCG00012871 NA coding upstream 511734 11212022 ~ 11232862 (+)
AMCG00012864 NA coding upstream 738017 11000201 ~ 11006579 (+)
AMCG00012865 NA coding upstream 746284 10978883 ~ 10998312 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding downstream 41143 11785938 ~ 11791546 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding downstream 218564 11963359 ~ 12008431 (+)
AMCG00012886 plxna4,LOC106921988 coding downstream 276671 12021466 ~ 12053113 (+)
AMCG00012885 NA coding downstream 490572 12235367 ~ 12242214 (+)
AMCG00012892 LOC103383002,LOC106525804 coding downstream 638263 12383058 ~ 12392105 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding upstream 276378 11466221 ~ 11468218 (+)
G40498 NA non-coding upstream 339240 11405005 ~ 11405356 (+)
G40496 LOC103376870 non-coding upstream 390237 11294217 ~ 11354359 (+)
G40436 NA non-coding upstream 585509 11103825 ~ 11159087 (+)
G40303 NA non-coding upstream 1001492 10740432 ~ 10743104 (+)
G40571 NA non-coding downstream 449690 12194485 ~ 12194686 (+)
G40604 NA non-coding downstream 606055 12350850 ~ 12351728 (+)
G40643 NA non-coding downstream 776668 12521463 ~ 12521819 (+)
G40710 NA non-coding downstream 996379 12741174 ~ 12742694 (+)
G40776 LOC107575789 non-coding downstream 1370098 13114893 ~ 13115253 (+)
AMCG00012848 NA other upstream 1202636 10540728 ~ 10541960 (+)
G40224 NA other upstream 1300149 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 2614385 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 2658896 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 3174705 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 708444 12453239 ~ 12500402 (+)
G40629 NA other downstream 743780 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 2683518 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 2771988 14516783 ~ 14529806 (+)
G41059 NA other downstream 2887562 14632357 ~ 14633413 (+)

Expression


Co-expression Network