G40584


Basic Information

Item Value
gene id G40584
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12237229 ~ 12239457 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50578
TCATTATTagtaaaagtaattatttatcattgtgaataaaaaataaaagaggagAAAACCCACCTCTAATGTCCCCAGACAAAAACTGTAGTGTCCCATTTACTTTTGTAACGTTCATGATGCAATTCACTTCAAAGGTACATTGTTTCTTCAGCTCCTTACACACTTCAATAGCATGTTCTTTATCATTGTCTTTCTagacagaaaaagaagaaatgcaCAACCTGAAGTAGTATACGCCTAAAAGTGATGTCACAGGGACAAAGGAAACAATGAGATCTCTTCAAGAACTGGACAATACATTAACAGTTGACCTCCAAAACaccatgaaacaaacaaacaatgtttcATTAATAAGGAATTTGAGTGAttagtattaatgtattttgtaatgcattaccCACTTTGCAGATCTTTAACATACCAAAGACAGGTAAAAACTCCTTCCAAGaaattgaaatacaacataTCCTGTGGCTACACTTGTTTTTAGGAAATATCCTATCTGAACGCAGCAGGTTTCAAATTATCAATCTCCCCCAGTGGGATgtgataaaaggaaaaaaacagttacaggtttttttttttttttccatggaaGCATATTTTCCACTAACTGAGCGTGggatcattttaaaaacatggttCCCTCTTTTCCTGTTCCTATAACTGactaaaacaacataaaaataagtgttaaaAGTAAAGTGAGCAACAACTCAAATTCAGTCCTGGGAAAGAAAACAACGCCCAAAACACCCTATATATAGTATCACTACACTAAAattcaatatactgtatatgtgcaattatataaaaaagagtttgattaacataaaacaacaagGAGGGTGGGGATTCCcaataactattattaatatttatataaatgtgctCTTACCAGTTCACAGTCTTTGGAGAGCTGTTGGggcaacaaaagcaaaatgggTTACAAAGATATAGTTCAATTAAAATCCCCATGGCAACACTGTAATATCCATTCTTTCCaagataattaatgtattatgctCCAGCAGAGTCTAGAAAAATCTCATAAATACAGGGAGAAATTAAAGAGACAGTAGACTTTGGGTAATTCTTTCTCCCCCAGTAGACAGCATAGGCAGAGTGTAGATCCTCACATAAGCAGAGAGCTTTGGCATGACTGACACAGTTTAGAAAAGCTCAGTCATGCAACTTATAGGGCCTAATCACAGAATAAGTGCAACAATGAGACAATCTGGATCAAGTGGCCAGTGCCTTGAAAGGTTGATAGCAAGGCAAATGCACCAGTGAGACAAATATCTACCAATGTTTGCACTCATTTACTAAAGATAATCCAATCACCAATCATTTCATTGCTGACAGAAGTTTTTTACTCCAGGATGATAGATTTGCAGCATATCATAGCTATTCTAACTAACGTTAGAATTCACATTCTATTGCATGTATTTCCTTGACCTAACTTTGAAAGCTGCAAGTAAAAATGTGTAATCCTGGAGTGTTAACTGTCACTGAATCAATGCTGTATATACACAGGTGGTTCAAATGATGATCTCACTGGGAAATTGTACTCAAATACAACTGTGAAAGGAAgactccaaaaaaaaaaaaaaaagaagcatcGGGCATACTTTCATCACAAAAAACTTAAACCATCTTAATTAATCAGCAAACTTACCATTACTCCGGGGAGGGGAAGAACTTTCCATGTCTTTTCAATAATTGTGATAGTGGTAGATTCACACTTCCCAGAAGTAGGGTGTGAtgatatttctgtattttttgtttcagtagACTGCCTGCCAGAAGTTGTTTTTGGTGAAGGGTGTGAAACTGTCGGTTTAGCATAATTAACATtaccattattaatattaatattagtagtacTGGGATTAGTATTACCAGTACTAGGATAATTAGTAGTAGAACTATGATTATTGATAACAATATTAGgcttagtagtagtagtactaggaTTACTTGTAGTATTACTaggattagtagtagtagtactaggattagtagtagtagtactaggattagtTATAGTAGTACTAggattagtaatagtagtactaggattagtaatagtagtagtagctgcAGTTTTAACAGCAGTAGCTACAACAGCTTGACCTTGAGCCAAAGAGGTTGACTGTGAAGTCTCTGTCTTTCGATCAGTTGAATTTGGATTGGGAGTTGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50578 True 2208 lncRNA 0.35 2 12237229 12239457

Neighbor

gene id symbol gene type direction distance location
AMCG00012879 exoc4,LOC106609608 coding downstream 598204 11597966 ~ 11639025 (-)
AMCG00012877 exoc4,LOC107555552,LOC107744930,LOC107725510,LOC107585070,LOC107676929 coding downstream 733695 11484011 ~ 11503534 (-)
AMCG00012878 NA coding downstream 774491 11436012 ~ 11462738 (-)
AMCG00012882 NA coding downstream 809642 11425333 ~ 11427587 (-)
AMCG00012880 NA coding downstream 851156 11365014 ~ 11386073 (-)
AMCG00012889 NA coding upstream 194037 12433494 ~ 12439926 (-)
AMCG00012890 gdi2,LOC107585127,LOC107754057,LOC107694307,LOC107560733,LOC107757239 coding upstream 249961 12489418 ~ 12493266 (-)
AMCG00012891 NA coding upstream 262699 12502156 ~ 12508836 (-)
AMCG00012898 NA coding upstream 290937 12530394 ~ 12617383 (-)
AMCG00012899 prkcq,LOC107555829,LOC107748461 coding upstream 412247 12651704 ~ 12669255 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding downstream 1496928 10739895 ~ 10740301 (-)
G40326 NA non-coding downstream 1497851 10739085 ~ 10739378 (-)
G40325 NA non-coding downstream 1498632 10737982 ~ 10738597 (-)
G40323 NA non-coding downstream 1508409 10728495 ~ 10728820 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding downstream 1685852 10549657 ~ 10551377 (-)
G40684 NA non-coding upstream 344054 12583511 ~ 12583719 (-)
G40735 NA non-coding upstream 501718 12741175 ~ 12742696 (-)
G40747 NA non-coding upstream 667990 12907447 ~ 12911725 (-)
G40798 NA non-coding upstream 1229848 13469305 ~ 13558179 (-)
G40868 NA non-coding upstream 1644140 13883597 ~ 13885175 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 1374907 10857881 ~ 10862322 (-)
AMCG00012858 NA other downstream 1483531 10740354 ~ 10753698 (-)
AMCG00012829 NA other downstream 3084824 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 4332774 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 5541305 6638480 ~ 6695924 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 939 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 657063 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 875436 13114893 ~ 13115487 (-)
AMCG00012931 snrpf other upstream 2100959 14340416 ~ 14344472 (-)
AMCG00012985 NA other upstream 3480056 15719513 ~ 15722457 (-)

Expression


Co-expression Network