XLOC_006108 (mtres1)


Basic Information

Item Value
gene id XLOC_006108
gene name mtres1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32636197 ~ 32641537 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012040
GCACTGCAGACACGGAGACTGCTGGTTTGTTTTTGCTGTGCTCGTTGATCAGTTCAAGTCAAGATTAGAGTCAAGAAGAGATCACTTAAATAGTGTTCAGTGTAACAGTATGCAGAGTCTATCGGTGCAGGCCCTGGCCCTGCGGCAGCTAGGCAGACTGAACTCCCTGCAGCTGCTCACACCATGCCATGGCTCCGGCCTCAGCATGTGGTGCCCACGGATGTTACACGCTCGTCAACTGTGGGGTTCAGCCACTTCCCAAACACACCGGACGGCAATGGGACCAAAATCATGGGATGCTCGGCAGAGCTGGACTCTCCATCAGATCCGACTCAAGAGCACAAGAAAGAAAGGGAAACAAAAAGCAGTGCACCAGGAAGAGACCGAAGAAGAGACTAGCGATTATGAGGATGAGTTTCCAGATGACCCAGGCCTGCCAAATAACTACAAAGACAACGAGAAAGTCGTCCAGTCCTTACGTTTTGATCTGGTTTTGAAGTCTGGATTGGATATTGCAAGACATAGTGTTGAGGATTCTTTCTATAGCCTCAAATTGAGACTGAACGGTCAGAAACTGTCCAAGAAGGGCAAATTGGTTAAGGTGGGGGATACTTTGGATCAGATCCTCAGTGATGACAAGGAAAGGGACACTATCTTGCTGAAGAGGGTGATCTTAAAAAAGGTGGTCTCAGAGACAAAAGATGGCGAAAAGCTGAAAGTCATTCTAAGAAGCTGGAAAAGTCTACAACTTCCCAGAAAGGATGTTTACAAGGACTGAAGACCAAGACTAAGTGCTTAATGGGTGAAAGATCAGAAAGTAGGACAAAAGTGGTATTTCCTAATCCACTCTCCAGTCGTTTGATTCTGAAACTGCAGACAGAGAATTTTATGAGGTGTTTTCTGGCTAGCAGAAGCTTTTTCATATCATGTCACTTGACAGTAGTTCTCGTAAGTGGTTCAAACTACTTGAAGAGGTTATGAACTTTACAGCTCACAAACACATCCTATTGTTTAGAGTTGGTTTTGGTTATATGAATTTTCAATTGTATGTAGTATTTACTGGAGTCACAGAAAACAATTATTAGAATTTCAAATGTTTTCAGGATCTCTGATCCCTTGATTATAATTGCTTAATTTGTTTTGACCTTTGTCTTTATGGCTTTGGTGGATTTCTATTAAGCAGTTTTCAGAGTGGAATACGCAAAACACAACTTTGATCTCTGTTTGTAAACAAGATACCCACTGACCCTCggtgagtaaataaaaacaaacatgaaaacaCA

Function

symbol description
mtres1 Predicted to enable RNA binding activity. Predicted to be involved in regulation of mitochondrial transcription. Predicted to be active in mitochondrion. Orthologous to human MTRES1 (mitochondrial transcription rescue factor 1).

GO:

id name namespace
GO:1903108 regulation of mitochondrial transcription biological_process
GO:0005739 mitochondrion cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2912 Predicted to enable RNA binding activity. Predicted to be involved in regulation of mitochondrial transcription. Predicted to be active in mitochondrion. Orthologous to human MTRES1 (mitochondrial transcription rescue factor 1).

Ensembl:

ensembl_id ENSDARG00000077614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012040 True 1283 mRNA 0.43 4 32636197 32641537

Neighbor

gene id symbol gene type direction distance location
XLOC_006107 rdh14a coding upstream 179355 32454262 ~ 32456842 (+)
XLOC_006106 nt5c1ba coding upstream 182265 32446169 ~ 32453932 (+)
XLOC_006105 CR769766.1 coding upstream 243698 32392383 ~ 32392499 (+)
XLOC_006104 osr1 coding upstream 485754 32144370 ~ 32150443 (+)
XLOC_006103 NA coding upstream 527725 32105265 ~ 32108472 (+)
XLOC_006109 sobpa coding downstream 98972 32740509 ~ 32796029 (+)
XLOC_006110 slc66a3 coding downstream 165882 32807419 ~ 32812903 (+)
XLOC_006111 CR936241.1 coding downstream 204956 32846493 ~ 32846609 (+)
XLOC_006112 NA coding downstream 265106 32906643 ~ 32916926 (+)
XLOC_006113 BX470227.1 coding downstream 343117 32984654 ~ 32984769 (+)
XLOC_006102 NA non-coding upstream 657713 31955220 ~ 31978484 (+)
XLOC_006101 NA non-coding upstream 785689 31806520 ~ 31850508 (+)
XLOC_006074 NA non-coding upstream 1707536 30920554 ~ 30928661 (+)
XLOC_006116 NA non-coding downstream 463374 33104911 ~ 33105228 (+)
XLOC_006133 CR524481.1 non-coding downstream 1784711 34426248 ~ 34426365 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07813654_07814853 NA coding CI01000012 null 7812900 ~ 7814853 (-)