G40776 (LOC107575789)


Basic Information

Item Value
gene id G40776
gene name LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13114893 ~ 13115253 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50828
tagtgtgttaccaattgttttcttggtgactatgatcccagctgccttgagatctataacaagatcctcccgtgtagttctgggctgattcctcagcgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgtgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacttCCTtcgacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtt

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50828 True 361 lncRNA 0.47 1 13114893 13115253

Neighbor

gene id symbol gene type direction distance location
AMCG00012908 gata3 coding upstream 100306 12994590 ~ 13014587 (+)
AMCG00012903 taf3 coding upstream 137913 12960348 ~ 12976980 (+)
AMCG00012905 atp5c1,LOC107748457,LOC107675979,LOC107555824 coding upstream 198460 12906385 ~ 12916433 (+)
AMCG00012904 NA coding upstream 213566 12884489 ~ 12901327 (+)
AMCG00012900 NA coding upstream 247836 12840241 ~ 12867057 (+)
AMCG00012910 celf2,LOC106927059,LOC103382440,LOC107092344,LOC106576215,LOC106609337 coding downstream 599069 13714322 ~ 13743896 (+)
AMCG00012911 NA coding downstream 635896 13751149 ~ 13760598 (+)
AMCG00012909 LOC106927059 coding downstream 658537 13773790 ~ 13785856 (+)
AMCG00012912 NA coding downstream 748554 13863807 ~ 13882206 (+)
AMCG00012916 echdc3,LOC106576218,LOC106609342 coding downstream 774455 13889708 ~ 13891565 (+)
G40710 NA non-coding upstream 372199 12741174 ~ 12742694 (+)
G40643 NA non-coding upstream 593074 12521463 ~ 12521819 (+)
G40604 NA non-coding upstream 763165 12350850 ~ 12351728 (+)
G40571 NA non-coding upstream 920207 12194485 ~ 12194686 (+)
G40555 NA non-coding upstream 1370098 11744596 ~ 11744795 (+)
G40777 NA non-coding downstream 59 13115312 ~ 13115532 (+)
G40788 LOC107575789 non-coding downstream 145391 13260644 ~ 13261179 (+)
G40824 NA non-coding downstream 768008 13883261 ~ 13885189 (+)
G40846 NA non-coding downstream 871697 13986950 ~ 13988088 (+)
G40920 NA non-coding downstream 1069987 14185240 ~ 14186136 (+)
G40629 NA other upstream 578964 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 614491 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 2572933 10540728 ~ 10541960 (+)
G40224 NA other upstream 2670446 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 3984682 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 1313060 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 1401530 14516783 ~ 14529806 (+)
G41059 NA other downstream 1517104 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 1966166 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 2182709 15297962 ~ 15317344 (+)

Expression


Co-expression Network