G40777


Basic Information

Item Value
gene id G40777
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13115312 ~ 13115532 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50829
tgctcctaatctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacttatttcactcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggatttttttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50829 True 221 lncRNA 0.33 1 13115312 13115532

Neighbor

gene id symbol gene type direction distance location
AMCG00012908 gata3 coding upstream 100725 12994590 ~ 13014587 (+)
AMCG00012903 taf3 coding upstream 138332 12960348 ~ 12976980 (+)
AMCG00012905 atp5c1,LOC107748457,LOC107675979,LOC107555824 coding upstream 198879 12906385 ~ 12916433 (+)
AMCG00012904 NA coding upstream 213985 12884489 ~ 12901327 (+)
AMCG00012900 NA coding upstream 248255 12840241 ~ 12867057 (+)
AMCG00012910 celf2,LOC106927059,LOC103382440,LOC107092344,LOC106576215,LOC106609337 coding downstream 598790 13714322 ~ 13743896 (+)
AMCG00012911 NA coding downstream 635617 13751149 ~ 13760598 (+)
AMCG00012909 LOC106927059 coding downstream 658258 13773790 ~ 13785856 (+)
AMCG00012912 NA coding downstream 748275 13863807 ~ 13882206 (+)
AMCG00012916 echdc3,LOC106576218,LOC106609342 coding downstream 774176 13889708 ~ 13891565 (+)
G40776 LOC107575789 non-coding upstream 59 13114893 ~ 13115253 (+)
G40710 NA non-coding upstream 372618 12741174 ~ 12742694 (+)
G40643 NA non-coding upstream 593493 12521463 ~ 12521819 (+)
G40604 NA non-coding upstream 763584 12350850 ~ 12351728 (+)
G40571 NA non-coding upstream 920626 12194485 ~ 12194686 (+)
G40788 LOC107575789 non-coding downstream 145112 13260644 ~ 13261179 (+)
G40824 NA non-coding downstream 767729 13883261 ~ 13885189 (+)
G40846 NA non-coding downstream 871418 13986950 ~ 13988088 (+)
G40920 NA non-coding downstream 1069708 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 1225414 14340946 ~ 14344481 (+)
G40629 NA other upstream 579383 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 614910 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 2573352 10540728 ~ 10541960 (+)
G40224 NA other upstream 2670865 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 3985101 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 1312781 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 1401251 14516783 ~ 14529806 (+)
G41059 NA other downstream 1516825 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 1965887 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 2182430 15297962 ~ 15317344 (+)

Expression


Co-expression Network