G40788 (LOC107575789)


Basic Information

Item Value
gene id G40788
gene name LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13260644 ~ 13261179 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50840
aataacaacaaaaaaatccagaaaaacgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtttttgatcccctatcaatcagcaagatttctggctcccgggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagggagtgctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaagaatgtcagggacaagattttagacctacacaaggctggaatggggtACAAACCAtcaccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacatgaggatcttgttaatgatctcaaggcagctg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50840 True 536 lncRNA 0.43 1 13260644 13261179

Neighbor

gene id symbol gene type direction distance location
AMCG00012908 gata3 coding upstream 246057 12994590 ~ 13014587 (+)
AMCG00012903 taf3 coding upstream 283664 12960348 ~ 12976980 (+)
AMCG00012905 atp5c1,LOC107748457,LOC107675979,LOC107555824 coding upstream 344211 12906385 ~ 12916433 (+)
AMCG00012904 NA coding upstream 359317 12884489 ~ 12901327 (+)
AMCG00012900 NA coding upstream 393587 12840241 ~ 12867057 (+)
AMCG00012910 celf2,LOC106927059,LOC103382440,LOC107092344,LOC106576215,LOC106609337 coding downstream 453143 13714322 ~ 13743896 (+)
AMCG00012911 NA coding downstream 489970 13751149 ~ 13760598 (+)
AMCG00012909 LOC106927059 coding downstream 512611 13773790 ~ 13785856 (+)
AMCG00012912 NA coding downstream 602628 13863807 ~ 13882206 (+)
AMCG00012916 echdc3,LOC106576218,LOC106609342 coding downstream 628529 13889708 ~ 13891565 (+)
G40777 NA non-coding upstream 145112 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 145391 13114893 ~ 13115253 (+)
G40710 NA non-coding upstream 517950 12741174 ~ 12742694 (+)
G40643 NA non-coding upstream 738825 12521463 ~ 12521819 (+)
G40604 NA non-coding upstream 908916 12350850 ~ 12351728 (+)
G40824 NA non-coding downstream 622082 13883261 ~ 13885189 (+)
G40846 NA non-coding downstream 725771 13986950 ~ 13988088 (+)
G40920 NA non-coding downstream 924061 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 1079767 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 1134397 14395576 ~ 14395899 (+)
G40629 NA other upstream 724715 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 760242 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 2718684 10540728 ~ 10541960 (+)
G40224 NA other upstream 2816197 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 4130433 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 1167134 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 1255604 14516783 ~ 14529806 (+)
G41059 NA other downstream 1371178 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 1820240 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 2036783 15297962 ~ 15317344 (+)

Expression


Co-expression Network