G40824


Basic Information

Item Value
gene id G40824
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13883261 ~ 13885189 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50893
AAAGtgtctcttggttgtgttggttattgtgtgtcaggtctctctcctcatgtccgtctgtgtttctgatgctccgGCACGTGTTTCtggcacgtgtggaagaaccgggaagaacgcaaagcgtcctaatgacgaacaATACTGCCGCAAAGAGTgcgatttgcgacaccacgatataaacgagcataatatgaaacgatagacgtttttctatcgtcatacgatatatatcgtcatatcgcacagccctaaaatatatacacacacaccacctacatttcatatatatatatatatatatatatatatatatatgaaaatagaACACAAATTCCTATTTTTATTGGctgctttttacttttttattgcaCCTCTATAGACTTGGCTCAGGCCTTGTTTTAGTGACCAGTTTGATGTATTGGAGATGCAGTCAACCTCAGTTGCACAATTGTTTGTCGTAGTATTGGTCTTCAGGAAGGTGCCACTGATAATATGGTACAAGGAATATTaagctctttttaaaatacaaaaaattaaaactaagtTAAACAGCTTACGTCTGTATTGTCCAATGTGTTAGGAGGCAATTCTTCTCCAGTGTACaatattaaaactgtatttcattgtgtaaaacaaaaatgtcattcACACCTAAAAGTGAAGCCTGTGTAACAACTTAATGCAAATGATTTAACATGACACAGCACATTcctttaaatagtatttttttttcctaagtaCAATCATCATAATGGGCAAGAacataggcggactggccatcgggcaattctggcaaatgccagaaggtCCGGTCCATTCCCATGTAGGCCGGTTGCCCCGTGTAGACACCCCTGACAGCACATCACCAGCCAAACCCCCCCTTCCGGACTGTACTTCGTCGGCACCCAGAACCACACTTTGTCATCCCTATGCCCCCCATCAACCTCCCGCCATccccccggaccgcactttattgggacccagacttcaccagccGTTGCCCCCCTGGGCAAGAATATCATGAATAGCACAAAAGCTTTCCAGTGCTTTCGTGATTCAtggtttttaaagaaaataatctttACTGTATTGAGTAGCTGTCGGGCTGCTAACGAAACCTGTCTgtattcaaaagaaaatgtagattttatatataatatacactatTTTCTTATGTCATCTAGAGTGGTTTGTTGCACTGTATTCTATTTTATGTGATTGTATCTTTTTAACACGTTACAAATGTAAGTCTTAGGATATTGTTTTGATATGTCTTTCTTTCCTATTGTCTTTTCACTTTAAGCaaagtcatttatttacatCAAACGTGTTATTTTTTGGAATACAGTACCTGGTTTTAAAAACTGTCAGTGTTTCCatactgtttaatttaaaggtactgtacacatacaaaaaatagttttttttatttatttatttaatccacacAGACCCCTTAGTAgtatacagaaacaaatactttCAGGAATTTGTGGGGATTGTACTGCTTATCTTTCcttattgttaaaataatgctaATAAGCCACACCTAAAGGGAATATCTGACAATCACTAGTTTTTATAGACCTGAGAGGCTACATTTTCATAGTCCTAGAGTAGGTTATTttctattgaaaacaaaattaatagattgcacaaaaaacatttttacattattttaaattttaatggaggaaaaataaGTACAGGAAATGACAATCCCCCCAGCCCCTTCACATCAGCTTTGGAAAGTGCAGGACATTCACATCAGGTATGAATCCAGGTGGCAACATCTTTCTTTGGAAAGGGGAAGGTGCAGTCTGCTTACTAATCCTGTTGGAGtcattttgattaattctgACCTAATCATGTCTAAGTAATTACTGTTGCCTAATCAATAAAAAGCCTTGACTGTATGTGTTGGTTgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50893 True 1929 lncRNA 0.37 1 13883261 13885189

Neighbor

gene id symbol gene type direction distance location
AMCG00012912 NA coding upstream 1055 13863807 ~ 13882206 (+)
AMCG00012909 LOC106927059 coding upstream 97405 13773790 ~ 13785856 (+)
AMCG00012911 NA coding upstream 122663 13751149 ~ 13760598 (+)
AMCG00012910 celf2,LOC106927059,LOC103382440,LOC107092344,LOC106576215,LOC106609337 coding upstream 139365 13714322 ~ 13743896 (+)
AMCG00012908 gata3 coding upstream 868674 12994590 ~ 13014587 (+)
AMCG00012916 echdc3,LOC106576218,LOC106609342 coding downstream 4519 13889708 ~ 13891565 (+)
AMCG00012913 NA coding downstream 9479 13894668 ~ 13904145 (+)
AMCG00012914 dhtkd1,LOC107569696,LOC104963732,LOC107740898 coding downstream 55237 13940426 ~ 13952847 (+)
AMCG00012915 sec61a1,LOC107748391,LOC107667387,LOC108271933,LOC103358725 coding downstream 68897 13954086 ~ 13960215 (+)
AMCG00012918 cdc123,LOC106576189 coding downstream 93359 13978548 ~ 13989776 (+)
G40788 LOC107575789 non-coding upstream 622082 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 767729 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 768008 13114893 ~ 13115253 (+)
G40710 NA non-coding upstream 1140567 12741174 ~ 12742694 (+)
G40643 NA non-coding upstream 1361442 12521463 ~ 12521819 (+)
G40846 NA non-coding downstream 101761 13986950 ~ 13988088 (+)
G40920 NA non-coding downstream 300051 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 455757 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 510387 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 512408 14397597 ~ 14397855 (+)
G40629 NA other upstream 1347332 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1382859 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3341301 10540728 ~ 10541960 (+)
G40224 NA other upstream 3438814 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 4753050 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 543124 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 631594 14516783 ~ 14529806 (+)
G41059 NA other downstream 747168 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 1196230 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1412773 15297962 ~ 15317344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G278189 NA non-coding CI01000070 null 2735515 ~ 2747544 (+)