G40846


Basic Information

Item Value
gene id G40846
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13986950 ~ 13988088 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50918
CCTTTTGTCTGAGGGAAATATTCGTGTTGTGACATAATTAGGattcttaaatatttttctttctaattaaaccataaatatatatttagaaaatctGACCTCAAATCACTTGAGTATGGAGTGTTTATGTCAAAATAATCCTCTTAAATGTCAGTATGATTTACGACAGCTTGACAttagttttgtttcagaaagtgggcttttttttccctcaaatAGAAACCTCCAGCTCATACTGGGTTCTCTAAAAGTGTCGCTGTAATATATGCATGTAAATGGGATGTGATGTGTATCTAACTGGTACAATTCTCTGAAGGCCCCTGACACTGTGATAATTCACCGAGGAGGACCAGGGTGTAATGTCTTTGTGTTCCTCTGTGGGGAGCTCaacaactgaaaacacaatTCCCCTTGAATTAAAAGTTTTGAAAGTCATACAACTTCACAAAGGTGCTAGGTGTCTGAGTGTAGTTCACTGCAggtttttttatgtgtattttttactaAATATGGCAGGATGCAtctgttgtattttataatgagGTAAAGTGTGTACAGTTAAATGTAGTTAACATTATCTTCATGTTGCAACTGCTCCAGTATCGGAATCAGTGCCACAATACAATAAAAGGGAACTGGAACTGCTGTATTTTTCATCCTGTAAAGAAAATTCAAAGTAAAATTACTAGCTCTAGTTTGAACTGGAACCCCCCCCCAAATGTTGATTTTAAGAGCTGAATAAATCATTTTCTTATTGAGCAACACAAACATCATTTAGGTCTTCAGTATTGTAATCTAATGTTGCTGTGTAGCTGTTGTTCTTGGAGCAGTGTAGCCTTGATCTAACCCTGATCCTAACCATAACCACCTCTATAATGTTGCTCCAGGAATAACATTCACACAGCAAAACAAGGCTATGTTTCATGTATACTCTATTCTTGTTTTCTCAGTCCTCTTAATGTATAACCTTCTTgaagaatgttttatttgtaagatTGAATTGTTTTAACTGAAGGAATATCAAAGTTACCTTTTATTcctgcagaattaaaataataataataataattgtaatggtgCCAAAGAACTCTAAATCCAACAATACATGTATATGAATATTCATTGCCAGAACAAAATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50918 True 1139 lncRNA 0.34 1 13986950 13988088

Neighbor

gene id symbol gene type direction distance location
AMCG00012915 sec61a1,LOC107748391,LOC107667387,LOC108271933,LOC103358725 coding upstream 26735 13954086 ~ 13960215 (+)
AMCG00012914 dhtkd1,LOC107569696,LOC104963732,LOC107740898 coding upstream 34103 13940426 ~ 13952847 (+)
AMCG00012913 NA coding upstream 82805 13894668 ~ 13904145 (+)
AMCG00012916 echdc3,LOC106576218,LOC106609342 coding upstream 95385 13889708 ~ 13891565 (+)
AMCG00012912 NA coding upstream 104744 13863807 ~ 13882206 (+)
AMCG00012920 NA coding downstream 54171 14042259 ~ 14061913 (+)
AMCG00012921 camk1d coding downstream 90236 14078324 ~ 14102726 (+)
AMCG00012923 NA coding downstream 158399 14146487 ~ 14152861 (+)
AMCG00012922 NA coding downstream 175579 14163667 ~ 14175623 (+)
AMCG00012926 cdk17,LOC107658862,LOC107656329 coding downstream 240550 14228638 ~ 14259163 (+)
G40824 NA non-coding upstream 101761 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 725771 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 871418 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 871697 13114893 ~ 13115253 (+)
G40710 NA non-coding upstream 1244256 12741174 ~ 12742694 (+)
G40920 NA non-coding downstream 197152 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 352858 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 407488 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 409509 14397597 ~ 14397855 (+)
G41054 NA non-coding downstream 637164 14625252 ~ 14625850 (+)
G40629 NA other upstream 1451021 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1486548 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3444990 10540728 ~ 10541960 (+)
G40224 NA other upstream 3542503 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 4856739 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 440225 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 528695 14516783 ~ 14529806 (+)
G41059 NA other downstream 644269 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 1093331 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1309874 15297962 ~ 15317344 (+)

Expression


Co-expression Network