G40920


Basic Information

Item Value
gene id G40920
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14185240 ~ 14186136 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50999
TCAATTTTCAAAGTTAATAGAAtgactggttttatttatgtatggaaagcatttctgtttgtttttatttttaagagtagtattcacacacgcacacacacagatatcaTCTTCATTGCTATCACCGGCCTTTGTCGATCCcctgaaggcctccccaagatgtttccacttgtctTCTCCGGTTCACACCCGCACAGCTTCTGATCTCAACCCCCCCCTTCTCTGTGCTCTTCTTGGGCTGTTTTTTCATTCCATAGCTTCTCTAGTCTGTCTCTGATCTATGTCTAGTCTATTGCCATTTTTAACACActcactctttcaattaattcacaaacctttacttgttttattcagGTCCATTGCTTTGATTTTCTGTCTCTTCCCATTATTCTtcacacttctctctctctctctctctgtctcatatatatatatatatatatatatatatatatatatagctctggaaaaaaacattgatttctgaacttggagtggtcttgttttttttccagaggtgtatgtatatatatatatgtatatatataacattttcatatatagCGGATGGGGTGGACAATTTTCAAGAAGAACACACCAAATATGGACAAAAGCAGATATAGAATGGATTCCAAGAGATTGAAAAAAgatcacataaaagatgggaagattaagtAAGATTCGCTGATTTACTGGAAAATTTGAcgatttgggaacattcaaaaatagactggataggatccttggatcacttagttattaatggacaccaaacaagcacgatgggtcgaaaggcctcctctcgtttgtaaactttcttatgttccttATAAGGAGGTTCTCTGACCCTGTACCAGGCGCCCTCTGAAAGCCCACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50999 True 877 lncRNA 0.37 2 14185240 14186136

Neighbor

gene id symbol gene type direction distance location
AMCG00012922 NA coding upstream 9617 14163667 ~ 14175623 (+)
AMCG00012923 NA coding upstream 32379 14146487 ~ 14152861 (+)
AMCG00012921 camk1d coding upstream 82514 14078324 ~ 14102726 (+)
AMCG00012920 NA coding upstream 123327 14042259 ~ 14061913 (+)
AMCG00012918 cdc123,LOC106576189 coding upstream 195464 13978548 ~ 13989776 (+)
AMCG00012926 cdk17,LOC107658862,LOC107656329 coding downstream 42502 14228638 ~ 14259163 (+)
AMCG00012929 lta4h coding downstream 113272 14299408 ~ 14313229 (+)
AMCG00012930 hal,LOC103041200,LOC107670217,LOC107740873,LOC108275357,LOC102785645 coding downstream 129705 14315841 ~ 14324873 (+)
AMCG00012928 NA coding downstream 146646 14332782 ~ 14340902 (+)
AMCG00012934 NA coding downstream 179962 14366098 ~ 14395069 (+)
G40846 NA non-coding upstream 197152 13986950 ~ 13988088 (+)
G40824 NA non-coding upstream 300051 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 924061 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 1069708 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 1069987 13114893 ~ 13115253 (+)
G40963 NA non-coding downstream 154810 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 209440 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 211461 14397597 ~ 14397855 (+)
G41054 NA non-coding downstream 439116 14625252 ~ 14625850 (+)
G41058 NA non-coding downstream 442447 14628583 ~ 14630610 (+)
G40629 NA other upstream 1649311 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1684838 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3643280 10540728 ~ 10541960 (+)
G40224 NA other upstream 3740793 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 5055029 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 242177 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 330647 14516783 ~ 14529806 (+)
G41059 NA other downstream 446221 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 895283 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1111826 15297962 ~ 15317344 (+)

Expression


Co-expression Network