G41102


Basic Information

Item Value
gene id G41102
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14733735 ~ 14736629 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU51218
TTCACTGTAGCAGCTGTCCTACATTGAAAGCTCAGTGTGACGACACTGCTGTAGGTTGTTTCACAGTTTCACTGTGTGGTTGGTTGTTGGGCTGTTGCAGGATGAACATGCAGTAACAGATTTCACAGTGGCAAAGGTAGCTAGGCAGAGATACCTTATGAATCTGATATGGGGACTGTTATGTAATGGAGGATGAGGCTGTGCAATGGCTGCACCATTATTGTTCTTACTGCATTCTTATTAAGTTGCTGGAAATGTCAGTGTTGAATCCATATAGTGTCTTTTTTGCCATtctcaatattattttcctttttctgaagAACTGGGCTGGCTATTGTTCTGTCATTTGTTACTTGTGTTGTCTAGGGTAAAATGGGACATTAGCACTGCCTGCAACATGTTTCACTTAATGTGTTGTGGCGATAAAACTGTGAGGTTTTTGAGAGAAAACGAGAGGTCCAAGAACAAAGTCGCATGCGTCCCCCCACTGGCAGACCGCAGTTTTGGAGGTGCTCCTTGtgttgacaaaacaaaatcacacaacCAGCTAAATGCTGCAGCTACTCCACGCACCTGATGACATGGTTAACTGAGCTGCCCATGCTGACACATCAGTCAAAGCTGATGAAGTGTTCTTAAACAGTGCGCCCTGCATTAGACATTCAAGGCGGCTCAGACTGCACTGGCATTGTGTTACACTGTGTTTTAAGTGTCAAATAAATCACTCATTTAGTCATACACATTGTGTATGACAGGAAATGAAACTTGTAAGACATAATTTGTATTGATGTCAGATATTGGGAGCTGCTCTTTGGTGCTAAAATGCTCTAAAACCATTTCCATTGTATTGCATCTGTTAATCTGGTGcatatatgtttatgtgtgtgcgtgggtattgttttgttttaaacaatttaaactgaaagcTTGTCTTGTAGAATTGCTTGTGAGCTCATAAACTGGGTTGAAAAGTCTGGGCTTGTTGTGGCTTCTGTTGCTTAAAGCCAAACTCTCTGGAGTCTAGTTGTGTGCAGTGCAACACCGTGAGACCTGCAGGTATAGGTGGCAATCTGTAAGGTCTGTTCCACAGTCTGGGCCTCGCTCCACTGACTCTGAGCTGCTTTTTCAAGCTGTAAGTTCAGGCCGAGAGTCAGGCACAGAAAggctgtgttttaatgtaatccTCAATGTGCCATCTGCTGAAGACAAAGGCCAGGGCAGGTAAACAGACCAAATGTTTGCAGAGCAGCAATGTGCTATAAATCCATCCAGAGCACTAAAATCTCACATTGTCCTGCATGATGAAATAATGTTGCCCGGTGTCGAACCATTTGAACACCTCTCTTACATTcatcatttttctatttgtttttacatgaatgagataaaaaaaatctgccttttTACACCCATgagagtttaaaacaacaacaaaaagataattattttaagtacatATTTGGGGAAGGCTTTGCTTTTCACTGCTGTTCCCATTGTCgagtgcagtgcagtttggGATTGTTATAGTTTTGGCCTCATTTTACTGTAGATAGATGGCACAGCCCTGAGCTGTCTTACTCTTTGTGTGATAAACGGCTTTATTTCATCTGCCAGAGCACGATTATCCTCGGCTGACCTCTATACACACAGAATGAAGGGAAGACCAAGGCAGCTCGGCCCCCACTCCTGTTATTTATAATGTGTCAGAGTGTACTTCCTGCCCAACTGCAGCCCCTCAGCTGAACAACTGACCTTAGCCATTTGCTGAGTGCAAGGCCACATGCTGTTGGCCTGGGCATGACAACACTTGGCGGGTCAGCTTGCTTCCCATGCAAGTGGATTTTAACTCAAGGTCTCGCAGTGCTCCAGTcctgcacacactgcagcagGTGCATGGActggatacacacacatacttcagaaagagagagatttgtttttttatgtgatttaaGTTCtgtgagtttttctttttgtgggtgtgtctgtttttattgcattgtgaaaaaaaaattaaacacacaataactGGTATGATGTTTCATACATTTCCAAatctcagtgcagtgcagggtttatatatattatatacacacaaaccctgcactgcactgagatTTGGACTTCTTTAGCATCAGGATTATGTGTTGGTTATCTTTTTGCTGATGTGAACTTTAGGGTTGTTCATCTAATGGGAGAATATCAGGAAGCTGGCCTTGTTGCACAGCTGTCTTAAACTGAAATAAGCAGGATGCTGAGAAGCAGCCTTGGGTCCACTGGATAAGGAAAAGGTGTCTAATTAGACTTAAGAACTGGATTAAACCACAAGTGTGACCCACCTGACAATAGCAATCTACAGACCGGTTACATTTACAAGTAGTAGAAAGAAGCATCTGGCATAAAGCACTGAGGGCAGGGTAGGTACTTTTCTAATAGcttgtgggtcaaagttttgatgtcATCCCATCCTGAGTCTAATTTCAATACACACTGGAGCTGCTTGAGCCGGTTCTGAAACAGTGTTGAGCGAGGCAGCTGGGCAGTTTCACATGACACTGAACAACTGGATTTAAGGTGCTACTACAGGAAACTACAGTGTACACCAGGTAAGAGCTAGCATTGAAATGGTCTTGCCTTCAGCCCCTTTAAACCTACAGGCTATTTCTGGCCCAAGCTGGGCTGAAGTGCCAGTGTCAAAGGGTCTTAAGAGTCAggaatactgtatttataaatgcacaatatatatattttttaaaagggtcatgcttcacaaaaaataaaaagcttgcaATATTGGTttcttgattaattaattaacttagcGTTCCTTTCAAATTATATCAATAACCTTCTGCTAAAGTAAAATTTTGGCCTCCAAAACTGTATATTACCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51218 True 2895 lncRNA 0.42 1 14733735 14736629

Neighbor

gene id symbol gene type direction distance location
AMCG00012944 NA coding downstream 31133 14675085 ~ 14702602 (-)
AMCG00012937 NA coding downstream 259154 14452415 ~ 14474581 (-)
AMCG00012938 metap2 coding downstream 300579 14424811 ~ 14433156 (-)
AMCG00012932 NA coding downstream 401933 14326065 ~ 14331802 (-)
AMCG00012933 NA coding downstream 453014 14262518 ~ 14280721 (-)
AMCG00012943 socs2,LOC107590271,LOC107732999 coding upstream 21172 14757801 ~ 14772607 (-)
AMCG00012948 NA coding upstream 58413 14795042 ~ 14796838 (-)
AMCG00012955 tspan12,LOC102782178,LOC108228819 coding upstream 315334 15051963 ~ 15065613 (-)
AMCG00012956 NA coding upstream 341469 15078098 ~ 15079375 (-)
AMCG00012959 NA coding upstream 429321 15165950 ~ 15174248 (-)
G41088 NA non-coding downstream 16171 14717234 ~ 14717564 (-)
G41047 NA non-coding downstream 145609 14587845 ~ 14588126 (-)
G41020 LOC107748465 non-coding downstream 203962 14528154 ~ 14529773 (-)
G41030 NA non-coding downstream 223050 14508557 ~ 14510685 (-)
G40967 NA non-coding downstream 393925 14339348 ~ 14339810 (-)
G41138 NA non-coding upstream 105614 14842243 ~ 14922316 (-)
G41191 NA non-coding upstream 338805 15075434 ~ 15077820 (-)
G41224 NA non-coding upstream 498991 15235620 ~ 15235862 (-)
G41243 NA non-coding upstream 500661 15237290 ~ 15278312 (-)
G41369 NA non-coding upstream 829880 15566509 ~ 15569851 (-)
AMCG00012931 snrpf other downstream 389263 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 1618248 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 1827402 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 2461946 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 3871413 10857881 ~ 10862322 (-)
AMCG00012985 NA other upstream 982884 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 1893602 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 3143596 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 3193269 17929898 ~ 18046714 (-)
G41807 NA other upstream 3439432 18176061 ~ 18191522 (-)

Expression


Co-expression Network