G41184


Basic Information

Item Value
gene id G41184
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15160436 ~ 15166469 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU51327
aaaaaaaaaaaaattgtggtTCCAAAATAAGCCTAGTAATGCTCTTGCACATTTAACAATAAGGAACAGattcattcaaatataaatctgCAACAATAGAAAAGAGTGAAACAGGGCAGATTAATACAATCTGAAGATTTATGTACAGTGAGAAACCGACctaaaaagtagaaaatattcaaaaagGTAATCGATGGAAGTTTTTTTGATAATCAAAACCATCTTTCTAGCTCAGGTTTCAAGTTTAATGTGGACggaaatataatgtgtattttcacTGTCACAGagcaggttttattttgatacaaGTACAAAATGATACATGCAAAGGCAATCTGGTGTAATTAATCCATTAACTAATTTTCACTTAAAAAGGCAACGGAGGGCCTTTCTTCCCAGCCCTGTCCTGGAGGAGTCCTCTCCCTGCTGGTTCCCATTCCCCACAAGCTGATCACTGAATCACTGATAATTGTCTTGTTTCTACCTTTTCAATGGTTCTCGCTCTTATTCAGGTGGAGTTCAGTCAGGTTAGTAGGTTAAAAActgggctggaatgaaaaccagtcAGCAGATGCAGGGAGTCCTGCAGGACCAGGGGGTGGGACCACTGCTAGGGCATTGGGACGCTTCACTTTGCTCACACATCTAGTCACTTAATTGGCATTAAATtgattataaacaaatacaattttcaagATAACCTATTTCCATATTAaagtacaaacaattaaataactatCCTCTTTCAACCAGACAACATTTAAAGGTGCTTGTGCAAGCCTGAGGTtattaaaaagcagtttttttgttaattgtacGTCacgagattaaaaaaaaaacagggcaCAGTTTTGACGCAGTGTTTTGTAGGAATGCATATGTGATGCAGCAGTCCCTCTGGCTGTATTGGtctctttaaatgattttttcCAGGGATTAATCTATACAAATTAAGGCCTATAATAGGTTCAGTGATGTGATAAAAATCTTGGCTAGAATAAAGGCCCaaaggttggagacccctgggATAGCACATTCAAAAGGCCAATATTGAACTCAAcattgaagaaacaaaacaaatattgctgGTCTCTGTACATCTGACAGTAGTACGTGATTATTTGGTTTTggcataaacatacatttctaagTTGTCTTGCATTGGAGAGAAGTACTTCtatataattttacaaNNNNNNNNNNNNNNCCCAAATATTATGagcaaaatttaaaaatcataaaacctGATTAAATGAAGATACCCCTCACAAATGAAGAGATAGATTTTCCCCTTAATATTTACAAAGACACTTCGAGATTTCACAGTGCTCATCATGCATTTGGTTTGCTGGTCGCAGGAATGATTTCCACAAGGATTGCTAGACATGGACACCACTAGGCCATTATTCAGgattatacaaaatgtacagaaggATAGTGTCCCAAAACCTATTCCTGTTTATGAGGGATGCAGCCTTCCATTTCCAAAACCTCGGGCCAGCCCTCGTACTTATTGGCCTCAGCATTGTTCTTAATGTGCTGGAAGGAAATCAAAAAAGTATGTCTGGGTTTAATGATCAAAATAATCATACAGAATCATCAATTTTAACTGCTTTCAGATTCAGTATTATTAATGTGTAATTctaaaaagtaaattttcctACAGCACTGAGATTAAATCCAGCaggtaaatgaaaaacaagaacactcATCTGTTCCTGCTCCGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51327 True 1729 lncRNA 0.36 2 15160436 15166469

Neighbor

gene id symbol gene type direction distance location
AMCG00012953 NA coding upstream 8613 15145480 ~ 15151823 (+)
AMCG00012950 ing3,LOC106576172,LOC106609303 coding upstream 83558 15067090 ~ 15076878 (+)
AMCG00012951 NA coding upstream 111591 15043019 ~ 15048845 (+)
AMCG00012952 kcnd2,LOC108412901,LOC107658801,LOC107744998 coding upstream 184614 14974710 ~ 14975822 (+)
AMCG00012949 LOC108428177 coding upstream 237474 14878762 ~ 14922962 (+)
AMCG00012957 NA coding downstream 46519 15212988 ~ 15224513 (+)
AMCG00012962 NA coding downstream 93779 15260248 ~ 15260925 (+)
AMCG00012960 NA coding downstream 108483 15274952 ~ 15279247 (+)
AMCG00012963 cog5,LOC106609192 coding downstream 254374 15420843 ~ 15475870 (+)
AMCG00012972 NA coding downstream 359565 15526034 ~ 15531609 (+)
G41158 NA non-coding upstream 205397 14926325 ~ 14955039 (+)
G41096 NA non-coding upstream 423775 14735821 ~ 14736661 (+)
G41092 NA non-coding upstream 431987 14728182 ~ 14728449 (+)
G41084 NA non-coding upstream 455251 14704960 ~ 14705185 (+)
G41082 NA non-coding upstream 469762 14690110 ~ 14690674 (+)
G41225 NA non-coding downstream 70818 15237287 ~ 15285288 (+)
G41226 NA non-coding downstream 81909 15248378 ~ 15264573 (+)
G41230 NA non-coding downstream 118872 15285341 ~ 15287816 (+)
G41265 NA non-coding downstream 314222 15480691 ~ 15483321 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding downstream 389677 15556146 ~ 15559305 (+)
AMCG00012954 NA other upstream 23707 15081419 ~ 15136729 (+)
G41059 NA other upstream 527023 14632357 ~ 14633413 (+)
AMCG00012940 LOC107748465 other upstream 630630 14516783 ~ 14529806 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 727235 14428313 ~ 14433201 (+)
G40629 NA other upstream 2624507 12488575 ~ 12535929 (+)
AMCG00012961 NA other downstream 131493 15297962 ~ 15317344 (+)
G41264 hbp1,LOC108230206,LOC107701066 other downstream 310710 15477179 ~ 15818342 (+)
AMCG00012973 NA other downstream 400024 15566493 ~ 15569943 (+)
AMCG00012978 NA other downstream 404437 15570906 ~ 15573468 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 454266 15620735 ~ 15631003 (+)

Expression


Co-expression Network