G41282 (si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652)


Basic Information

Item Value
gene id G41282
gene name si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15556146 ~ 15559305 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU51457
TCCAATTCATTCTTAGTTACCTTTAAATTCTCCTCAATGCGCTGGGGGGTGATGGATTTAGGGATGGCAATGACATTCCTCTGGATCTGAAAGCGGAGCaaaacctgaaaacaaacacaatcattaagATCTCCTTTCCAAACCAGTTTTAGATCATCATGGGAGGAAAACACACAGAATGGGATGAGTGGAAATGTAGAAACCTTAAAACAGATATCTAGATCCAGTTCTAGCTAGCCTCTCTATTCTCATTTGaacacacatttgaaaataacaatttatacATGAATGGAAGCTATATTAcccatcatgtttttttttggtagctATAGTAACATAAATGGTGTAATAAGTTCAAGTATGTTCTTGAATAATCCCACAGAGTCAACATCAGAAGCATGACTCGGAAGTAATTTCCAGACTAGTGTGTGAAGggatgtgggaaaaaaaaaaattatatatatgcgcatatacacatacacacacactactggcCAAAAGTtatagaacacccccatttgtccagtttttattgaaatgtaagcagttaacctgaataacctgaaatggtacaaaggtaagctgTAAACTgccaggtttaaaaaaaaaaaggttaggttaccaaaaactgaaaagtaatgtacatttcagagttatatactgttttactacaccctcttaagcattatttggcagctCCTGTGCACAGAGGTTACACTGTATTTGTACAATAGttcacatcgtttgaaagcttattctcttggctaccagtgcgtttcattctcaaacacatctgatttacagtttccatgttgcctgctgtcattcagagcccggggagTAAATGCGCAGTCTgctctggggggggggtgtctcagcagtgaagagtacacatgggattgaagttaaattaaaattatttgttctatgctttaatttcagagtacattgagacattaaactgcgtacatttcaatgaaaactggaaaaatgtaggtgttctaaaacttatACTGTACTAGAGTGAACTGGGTGGGACTGGGaaagttttaataataaagctCTTGGGACAGGCAAGAATGGGATTTAAGTTTCTGGTAATGGGTAAGAACAGGACCTTATGCTGAAACAGAAGTCAGGCCTCAGACTTGTTACTGGGCAAAGAATGTGATAGAATGATGTATGTGCAGGATGTGCAAGCTAAGCTTTTGaatttgttatacattttccacagtGCAAGAAATGAGGAACTAAACTATATGATCACCATATTTGCAAATGTGTAGATACATGCTCACTTGAGCCACTTCCTATAAGAACTCAGAGAACTTGCATGAAGAGAACTTGCCTTCTCTCCTGCAGCTGCAGTAATAAAGCGTAGTTTTTAACCCAAACATGAAGTGAAGCTTAATTTCTTCGAcaattaattgaagtaatttgcttatttgacttttaaaattgtgtattaaGTGATTCCTTGATAAGATAAGTtccatatacaattatatacttgacttaaaatgtactaaaatgtatctactgtttaaaatgtaaaggctCCGATTTAAgaaagttcaattaagggttcaattaagtaaatcaagagctcggttggaacaaaaaccagcagggtaggtggtactccacgACCAGGGTtaagaaccactgctttaaactAATTTCCACTTGTAACCTCAGTGAACCCAAATTCCACGTTACTACTCTAAGATGACCCCCAACAAGAGAGACCATTGATCTAGTCTTACATAGTTGGACACCAAAACTCCCTCTGTGCAGGTTACTGGAACACCTGaattacagaaaatagaaaCTTACCATGGTCTAGCAACCAGCAGCAGAGCTGTGAGGCGAGGAGCATACTGACTGAAGCAAGTATGGATTAAAGTAATAAAGCCATGTCAACTGTGAACGCTGCCTCATTTTCAACAGGCAGGCTGTATTGTAGTTCCTAAtgtgatacaaaataattgatttctTAAAACTATTACCGATTCCTTTTGTGGAGACCCATCCAAAATAATACAGTCACATTTACAGTCCAACGTCGAGGGACCTCTATTCATCTACCTGCGCTGTGGACTTCTTGTGCTTCTCAGCAATGGCCTTGATATTTGGATCTTCCAGCAGGGAAGGATCTTCTGGTTTGGCCCATGGTCTATCTGGAGACCCTAGGGGACTGTAAGCCGTCACAGAGATCCCCTTCGATTGGCAATACCTTACGAGCTTTTCCTGAGTCAGGTATGGATGGGATTCAATcTGGTTATTGGCAGGTTTGTACTTCAATCCAGGCTTGTTTAATAGAATTTCAATTTGGTCACGATTGAAGTTGGAAATCCCAATGGCCTTTACCATTCCCGCATCTACCAACTCCTCCATACCCTCCCAGGCGTCTACAAAGCTGGTGTCATCCGCAATTACTAACTGGTTGTCATCCAGTG

Function

symbol description
akr1b1 Enables alditol:NADP+ 1-oxidoreductase activity; glyceraldehyde oxidoreductase activity; and retinal dehydrogenase activity. Involved in cellular hyperosmotic salinity response; glycoside metabolic process; and retinoid metabolic process. Located in cytosol and nucleoplasm. Implicated in arteriosclerosis; cataract; diabetic neuropathy; diabetic retinopathy; and type 2 diabetes mellitus. Biomarker of hepatocellular carcinoma and stomach cancer.

NR:

description
uncharacterized protein LOC553452

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51457 True 2459 lncRNA 0.39 4 15556146 15559305

Neighbor

gene id symbol gene type direction distance location
AMCG00012974 NA coding upstream 2094 15545635 ~ 15554052 (+)
AMCG00012972 NA coding upstream 24537 15526034 ~ 15531609 (+)
AMCG00012963 cog5,LOC106609192 coding upstream 80276 15420843 ~ 15475870 (+)
AMCG00012960 NA coding upstream 276899 15274952 ~ 15279247 (+)
AMCG00012962 NA coding upstream 295221 15260248 ~ 15260925 (+)
AMCG00012980 NA coding downstream 56952 15616257 ~ 15618444 (+)
AMCG00012983 NA coding downstream 72121 15631426 ~ 15639738 (+)
AMCG00012986 NA coding downstream 146293 15705598 ~ 15715080 (+)
AMCG00012988 sap30bp,LOC107725325 coding downstream 284548 15843853 ~ 15859012 (+)
AMCG00012991 NA coding downstream 311787 15871092 ~ 15912709 (+)
G41265 NA non-coding upstream 72825 15480691 ~ 15483321 (+)
G41230 NA non-coding upstream 268330 15285341 ~ 15287816 (+)
G41225 NA non-coding upstream 270858 15237287 ~ 15285288 (+)
G41226 NA non-coding upstream 291573 15248378 ~ 15264573 (+)
G41184 NA non-coding upstream 389677 15160436 ~ 15166469 (+)
G41303 NA non-coding downstream 160202 15719507 ~ 15722866 (+)
G41325 NA non-coding downstream 299759 15859064 ~ 15859370 (+)
G41469 NA non-coding downstream 514209 16073514 ~ 16074099 (+)
G41484 NA non-coding downstream 562138 16121443 ~ 16124871 (+)
G41517 NA non-coding downstream 773985 16333290 ~ 16333574 (+)
AMCG00012961 NA other upstream 238802 15297962 ~ 15317344 (+)
AMCG00012954 NA other upstream 419417 15081419 ~ 15136729 (+)
G41059 NA other upstream 922733 14632357 ~ 14633413 (+)
AMCG00012940 LOC107748465 other upstream 1026340 14516783 ~ 14529806 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 1122945 14428313 ~ 14433201 (+)
AMCG00012973 NA other downstream 7188 15566493 ~ 15569943 (+)
AMCG00012978 NA other downstream 11601 15570906 ~ 15573468 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 61430 15620735 ~ 15631003 (+)
AMCG00012987 NA other downstream 223059 15782364 ~ 15791627 (+)
AMCG00013015 NA other downstream 1160050 16719355 ~ 16729533 (+)

Expression


Co-expression Network