G41402


Basic Information

Item Value
gene id G41402
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15790292 ~ 15822009 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU51593
ctgatcatttctttgtcaNNNNNNaaacgtacaaaatcagcaggggatcaaatacttttttcccctcactgtaggtatatatatgtttaagtGATTTTCCTGAAAACAGCACCTAGAAATGTCCGATAGTATTATAAAACTAACAGTTTCTGGCTTTGTCAAATGTCGAacatctattattatttctgcttcacCCTCTATTGTCCATGGGCAAATTGTACTGAATACACTAATTAGATTGCAatataaatggagaaaagtattttgtgATTCTTTAATACATGTGTTTTCTGAAAACTCACTGAATTAAATCACGTTgcactgtttttcctttttgcacgtttaacattatttccacACTGAAACCTAGGTGATAACAAAGgcagtctttaaaataaaaaaagcaatttatttcaATACTGAGTAATGCAGTTTTCGTAATGCCATCATATGCGAGtcagcttatttttttaaaactaaatatttggaGGTTTATAAATGGAACACCATCTACTGATCCTTCATGTATATTTAGTTGCAGACTTATGGCTTAAATTAACTGAATGCATAGTTCCACTGTAATTAAGTTTAGAATTGGAAAATCCTATAATTTGGAATGTCTGTCCTAGAAGATGTTTCAACCACAAAAGGAAAGACTTATACTAGACCATTATCTCTTTCTTGAATTTAGTATTCTGTATTCATAGTAACATTTTCAGGTGTTGGTGTATTCTGCACAACATAAAGAGACAACAGCTGTGTacgttcatttaaaaaatataaaataatatacttttaattttaataaaatttaaaGAGCCAGCAATATAAGGTGCACATATTTCCTCCCTGGCTGGGGACACAGGAAAGTGCAGTATTAACTATGGTGATACCAAAGCCCAAACAGTGAGTCTCAAATATCAAAATATCTTTATAATGTTTGTTCTTGGAAGAAAAAAGACACTTGTTTGTAAACCAGCACGAAGTCCAAAATCCagaataaatgaaacaaaaaaaaaacccacccTGAACCTTTATTTATGTGGGATTTTTCTTTGCCCTATTTCTTACTCAACTTATCACCCTAAACAAGTCCAACACAGGCAGCCATGTTTTCAAAGAAGCTCTGTGAAAGCACAGCAGTGTTTGATGTCTGGTATAAGCTGGATATTGCTGCGATTCAAGCACTAGAGTTCTTCTGTCATTTTTGGCTGTACTTCCTTAAGCAGTTTTGAGGTTATGTTCTTGGAGGAATAGTTGTAATTGTTCTCCCTATGGTGCACAATGAGGGAGTTTAGTTCCATATATCTGCAGGCATGACCAAGTTAGCATTGAAGTTTTAGCTGCCCTTGGAgaatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51593 True 1360 lncRNA 0.34 2 15790292 15822009

Neighbor

gene id symbol gene type direction distance location
AMCG00012984 NA coding downstream 31622 15725994 ~ 15758670 (-)
AMCG00012981 slc13a4 coding downstream 194954 15570993 ~ 15595338 (-)
AMCG00012976 si:dkey-180p18.9,LOC107725652 coding downstream 224676 15554199 ~ 15565616 (-)
AMCG00012979 ascl4 coding downstream 253069 15536669 ~ 15537223 (-)
AMCG00012975 pik3cg,LOC106609208,LOC107656384,LOC107583938,LOC107590535 coding downstream 267363 15512472 ~ 15522929 (-)
AMCG00012995 NA coding upstream 92219 15914228 ~ 15924404 (-)
AMCG00012994 h3f3b,LOC106912265,LOC107377396,LOC106963510 coding upstream 128827 15950836 ~ 15955239 (-)
AMCG00012999 NA coding upstream 149123 15971132 ~ 15999882 (-)
AMCG00012997 NA coding upstream 196721 16018730 ~ 16021747 (-)
AMCG00012998 NA coding upstream 215874 16037883 ~ 16074028 (-)
G41386 NA non-coding downstream 150302 15638879 ~ 15639990 (-)
G41369 NA non-coding downstream 220441 15566509 ~ 15569851 (-)
G41243 NA non-coding downstream 511980 15237290 ~ 15278312 (-)
G41224 NA non-coding downstream 554430 15235620 ~ 15235862 (-)
G41191 NA non-coding downstream 712472 15075434 ~ 15077820 (-)
G41442 NA non-coding upstream 133426 15955435 ~ 15956038 (-)
G41443 NA non-coding upstream 134090 15956099 ~ 15959544 (-)
G41444 NA non-coding upstream 137667 15959676 ~ 15960333 (-)
G41445 NA non-coding upstream 139348 15961357 ~ 15961841 (-)
G41448 NA non-coding upstream 143928 15965937 ~ 15966308 (-)
AMCG00012985 NA other downstream 67835 15719513 ~ 15722457 (-)
AMCG00012931 snrpf other downstream 1445820 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 2674805 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 2883959 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 3518503 12240396 ~ 12271789 (-)
AMCG00013018 NA other upstream 808222 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 2058216 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 2107889 17929898 ~ 18046714 (-)
G41807 NA other upstream 2354052 18176061 ~ 18191522 (-)
G41836 NA other upstream 2420741 18242750 ~ 18244093 (-)

Expression


Co-expression Network