G41443


Basic Information

Item Value
gene id G41443
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15956099 ~ 15959544 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU51638
GTGCTTTATGTAGTGCCTTGCTCACTCCACCAAACTCGGTCTGAGTTTGGCAGCGAGGTAACTTACTCGTCCCCCTCAGGACAGCTGCCCGAGCCCTCCTCGTATTTGGTGCAGTAGATGTCGGGGCTGTAATTGAAAGTGCCGTCGCGGCGGCGGACGGGGCGGCGGCGGCGCTGGTTGATGAAGTGCCAGTTGAAGCAGGTGAAGGGTCGGTGCTGGGAGCACTTGTGCTGCACAAACAGAGGGCACTGCTCTGTACGAAACTCCTTCAAGtacctgagacacagagagagaaggcgATAGGAAAAGGATGAAAATGTAGAAAGCAtgacacagaagaaaaaaatattatacgGTGGTGTTCAAATATATTCAGAGCAATGATAAAGTGTAACTAAAAACTGAGCAAGGAAATGCAGGTGTATTCTCAGGATTGTTCTATACTAATGCAGTAAATCAAGAAGTAGAGAACGGTTTATTTATCAATATAGAATGTATTAAGAGCATATATGTGAGAAACAGTTCTATATACAAATTTATTCAGACACAAGCTTTGTGTAGCTTTTTAATGGGTTCAAAACAGCTTCTCAGGAGGAATATCTATAAAGAACTTCTCCAACTCTTCCAGGTCCCAAGAATACAATTTGAACATCATGTATTTAGAAATACTGACCAATGTCCTATACAACATTGGTATCAACATTTTGAATAATAGTGTGTATCTGCAGTTCCTTGCTTTTTAGTCACACTGTAGCTAAAGCTGATCACCTGGAATACTTCAAGAAAGAGCTGGATCCTTCATAACTTTTCTTGTGTTCTTGGGAGTATTCTGACATTTTTCCTGTTGGTTTAAGTCTGAATTGAGTCCATGCTTAAAGTCTTACCTAAAGAGTAAATAGCTTGTGCAGAGTGACAATAGCATAAATTAGTATCTGTATCCAATGTATAACACTCATTTCAGCCACTTCATAGAAATCAGTGGCAGTCATGTACACCCCACTAGTCTTAACTAAGTTCAATCTTTATagtttgcatttccattgtgtttccatcagtgttcaacaaactctgaaacaTCATTGATATAAgcatagtaaataaataactgaatcgCTCTGTTTCAAGTAAGGAGAatgaatacttttgactacAATTGAAATTAATAGTCAAACACAATAACAGTTTTCTTTACAGGAAAATATAATATcagcacaaaaacaagaaagagaaaacatataACCGGATGAATCCTCACAGACGTAGTGCATGATGAGTGGATATCACAAGCAATGACCTTGAAATACTTCCGTACAGCCAATAACAGAttcataacaaaaacatgactttATATTAAGATAATTTAACACCTTCTTCCTTTATCAGCTAAATCATCACTGAATTTCATCCAGCTGTTTCTTGAAGTAACTTCAAGTTTCAGGTTCAAACACATCACTATTCCTCATTTCACTTATTAACTTGAAATAGTTCTTGGCCTTGTATTATGTACCATGCTTAAGTATATAATCATGTCATTCCAACCTAAAAAGGGGtttctaaatgcatttagtTGAATAAAAGGATCTGTTTAAACAAAAGGcagagtttttaatttttggaaCCACCAGCTACATTTCAACTGTTCATAGTCAGACATCAATGAAATGTCACGATAGCCCTCCTCCATGAACAggctgaggaagaggaggcccGACATTCATACCTCaaacaaataggaaaaaaacaatcatgaatAAGGTTAAATCACAATAGGGTTGTTCAgcctacaaatgtatttatttaaaggtgcATATTctacctttaaaacaatatttcctGCTACAAACATCAATGTAATCATaaaaatgacacacaaaaacactgaagtgCTGACCAGATGCgtttaaaagttaaaacataGTAGGAGACTGAGTGAATAGCAGAATAGTATTTGTTTCACGACAAGCCAGCCTGAAAATTGTTGACTTACAGCTGCCAAACAAGTAGGTACATAAAACTAAATGactgaaaaacatcaaaaaggGGGTTAGGGTAATAAAATTGGGGTTACTTCAGTCGCTACTTTGGTGTCTCTGTTGTGATATAACAttacaacaataatagtaacaCTATAGAACTATGGACAAACTCActgctgaaatgtgaaattgttGGGGCCAGGCAATACACTGATCTCTTGTCGTGGTCATAATTGATATTCccattactactactacgacaaacacaaacatcctATTTATGAGTAGGTGTTGTTACCAATGTGAAATATGATCGGCGTGCATGTCGACAATTGAAACTTCATTAAAGCCTCGTAAACATAACTTATGAACGGCCTCGATGtgaacacattgttttttaatgaaccAAACGAATTCGACAATTCGAACGACAGAACATGATTCGTTTCGAACCCCATTTCCCCAGAAGCGGACTGACTCCGACCGGTTCCCACGGGACtcggccgggccgggccggatCGAACCGGATAGAAGCCGCCCCCACGAGCCCTCCCCTTCCCCCGCCACGTCAGGTGAGGCCTGCGCGCGGCCGTGGCACGTACGTGTAGTGCTGCGGTTTCTCGGGCTGCGCGTGCAGCGCGCTGGCGGGGGACGCCGAGCCGCCGGCCGCCCCGGAGGCGGAGGTCGCGGGTGCGGCTGATCCAGCGGCGGCGAGGGAAGCGCTGGCTGGCGCGGGGCCTTTCgacatgtttctctctctctctctctccgccacTCTTCCTTTATTATTGTTCTCTACACTACGAGGTCCGCATTCTTCCACACAGTGCGcttgcgcctggcacagggaaGGGGAAGCGaacggggggaggggggacacCGGCCGAGAGGACCCTGGGAAATGTAGTGCTCGGACCTCCTGGCTACACGGAGGAAGACTGTGAAATATAATAGCCCTACAATGTAGAGTCTCTTAAATCGCCACTGCATGATTTACTGCAAGTGTACACTGTATCCAGACATGTGTGTGTAAAGAAAGCGGGGTTTAAGCTATGGTTGTTTTGGAGGAAACGAATGCGCTATAATCCTGCTGGAACCTGTTCCATGAAACGATCTCACCAGCGTACAATGCCGTCCTCCTCCCACACCTCCCCAGCGCACTGAGACACAACGACACCAGCGACTTAAACTAACCTTAATCTAGTTGCCAACGGACCGTTGCATTTTGTCCACTCAGATGCGTTACTTTAACATCTTATAGTCAATTGTGAATAATCGCAATATGGCCCGAGACCTCTCGAGTCCGGGACACACCGGACGGATGGCAGAGCCGGTGTGTGCGGCGCCGGTGACACTGCAGCTCTGCGACCAGCCCAGTCCTGTGAGCCGCGGCTGCCGCACCACTTTGACGCGTGTTTTTAAATAGACCATGTATTTTCATGAATGccatttgaaagattttaagTATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51638 True 3446 lncRNA 0.43 1 15956099 15959544

Neighbor

gene id symbol gene type direction distance location
AMCG00012994 h3f3b,LOC106912265,LOC107377396,LOC106963510 coding downstream 860 15950836 ~ 15955239 (-)
AMCG00012995 NA coding downstream 31695 15914228 ~ 15924404 (-)
AMCG00012989 NA coding downstream 147414 15803957 ~ 15808685 (-)
AMCG00012984 NA coding downstream 197429 15725994 ~ 15758670 (-)
AMCG00012981 slc13a4 coding downstream 360761 15570993 ~ 15595338 (-)
AMCG00012999 NA coding upstream 11588 15971132 ~ 15999882 (-)
AMCG00012997 NA coding upstream 59186 16018730 ~ 16021747 (-)
AMCG00012998 NA coding upstream 78339 16037883 ~ 16074028 (-)
AMCG00013002 NA coding upstream 121717 16081261 ~ 16085241 (-)
AMCG00013004 NA coding upstream 140772 16100316 ~ 16104419 (-)
G41442 NA non-coding downstream 61 15955435 ~ 15956038 (-)
G41402 NA non-coding downstream 134090 15790292 ~ 15822009 (-)
G41386 NA non-coding downstream 316109 15638879 ~ 15639990 (-)
G41369 NA non-coding downstream 386248 15566509 ~ 15569851 (-)
G41243 NA non-coding downstream 677787 15237290 ~ 15278312 (-)
G41444 NA non-coding upstream 132 15959676 ~ 15960333 (-)
G41445 NA non-coding upstream 1813 15961357 ~ 15961841 (-)
G41448 NA non-coding upstream 6393 15965937 ~ 15966308 (-)
G41449 NA non-coding upstream 8562 15968106 ~ 15968353 (-)
G41451 NA non-coding upstream 47870 16007414 ~ 16007791 (-)
AMCG00012985 NA other downstream 233642 15719513 ~ 15722457 (-)
AMCG00012931 snrpf other downstream 1611627 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 2840612 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 3049766 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 3684310 12240396 ~ 12271789 (-)
AMCG00013018 NA other upstream 670687 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 1920681 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 1970354 17929898 ~ 18046714 (-)
G41807 NA other upstream 2216517 18176061 ~ 18191522 (-)
G41836 NA other upstream 2283206 18242750 ~ 18244093 (-)

Expression


Co-expression Network