G41484


Basic Information

Item Value
gene id G41484
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16121443 ~ 16124871 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU51686
CTCAGAGTATACCTTATTGTTTGCTATGGGGCAAAGTAGGATGGCACAATGAAACCCTGAATTCAGTGCAATGGGAGCATTCCATGTGCAGGGCAGGAGGGCACAGGCTGACACTCACCTGGGCAGGCAGAGGTGAACATGGGCAGGGCATGCTGGTCCTGGTTCCTCCGCCGGTGCCGCTGGACAAATTCCCTCTGGCTCTCCAGGAGGCTGAAGTCAGCAGCCAGTGTGGCATCAAACACATGGTGCACCCCTGGAGAGGAGTACCAgaggcagtgagagagagaccctAGTGCCTTAGCTTCTTGTCAAGCTGCTTTACACTTCACAATTATTGCCAGGAATACATGTCATCTATAATTGCTAAAAAAAAgtcctatttatttatatgttttttttctgcccaTTTAAGCTTTAGAGCATTACAGAACCTCTTCAGAAATTCAACAGAAAACAGATACAAGGGTATTCAAGTAAACCACTACATATTGATGCGACTGTGCCATGTCTAGATTTCAAATATGGTTTCTTTGTATGAATGTTTCTGCAACATTGTGTAAATCATGTGCAATTTTCATCTGTGTATCCAGGTAGTCCAGGttcagtgcagtgtctgtgtaactggttttagaaaaacattttcatccaaggccatacaGAGAACAGACAAAAAGAAGTttgtgataaagtttggggtacctcatTGACGTCATGTAGTTGCTCAGCAACCAAGGGAGtaatcttctatatgatagtatgttctttcCAACTGACCGTCCCTGGAGCGCTTTGTTATTGCTGAATAAACGACTTtgatattattctaattaaattggGCCTATtacatacaatattaaataccCTTACTGCTTACCGAGCAGGATCtccaaataattgaaaaagatTTGATCATTCTAGAAACGTCTGTATTGTAAGACTAACCTTACTCCTGTAATTTCAAAGCCTATCAAAAGTAGCTGTTGCTCCACAAGAACAGAAAGCACAATATCTCTATTGTTATCTCTACTGAAGACACATAAAtggtttaaattacaatatctttatacaaatctctttaaaatgcaatatttataaattgttaTTATAGAGAATGTCAGTTTTCCTAAATGGATGAATTGTTATCTTTAGGCACTAGGTCACTTCTTATGACACTTTCTGTATCTTCAGGAAGAACATGTTTTGATAGCCTCTGAAATGACAGATGAATATTTACATGTACAAATCCTTTACTAAATTACTAATTTCATAGCGTTAGATTTTTTTCCTGATCACCTGTTCATCCTCACCACATCCTGTCAGATATCAAAGGATAACAGTTATGCATGCTTGCCGATATGATCAAACATGGTGGGTGTAACTAGAGGACTGCCAGCACTTACCTATAGTTTTTAGGAAGCCACAGAGTTTTTTGGTGGCCTCTGGTATGCTGAGGTTAAATCTGGCAGCAAAGAAAGGCAGAGACTGGGGGCACAGAGAAACTGCCAGCACTTTGTGTTTTGAGGTATCGCATTCTTGTTAAGGCTAAGAATCTGAGAGAGCTGCTGAAGGTTTTGCTGGGATATCCTCTGGCTCTCCTCTTCGGTGACGCACCGGTCACACGCCAGGCAGTCGCTAAGGtacactctctctcccaccaGCTTATGGAACTCGCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51686 True 1676 lncRNA 0.41 2 16121443 16124871

Neighbor

gene id symbol gene type direction distance location
AMCG00013000 NA coding upstream 92617 16022722 ~ 16028826 (+)
AMCG00012996 LOC107567801,LOC107578800,LOC107549326 coding upstream 107133 16008943 ~ 16014310 (+)
AMCG00012992 NA coding upstream 150205 15957831 ~ 15971238 (+)
AMCG00012993 NA coding upstream 164443 15956821 ~ 15957000 (+)
AMCG00012990 NA coding upstream 171311 15928314 ~ 15950132 (+)
AMCG00013005 NA coding downstream 13128 16137999 ~ 16145425 (+)
AMCG00013006 NA coding downstream 30808 16155679 ~ 16183420 (+)
AMCG00013009 NA coding downstream 311193 16436064 ~ 16437861 (+)
AMCG00013017 NA coding downstream 518045 16642916 ~ 16677331 (+)
AMCG00013010 NA coding downstream 583401 16708272 ~ 16710011 (+)
G41469 NA non-coding upstream 47344 16073514 ~ 16074099 (+)
G41325 NA non-coding upstream 262073 15859064 ~ 15859370 (+)
G41303 NA non-coding upstream 398577 15719507 ~ 15722866 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding upstream 562138 15556146 ~ 15559305 (+)
G41265 NA non-coding upstream 638122 15480691 ~ 15483321 (+)
G41517 NA non-coding downstream 208419 16333290 ~ 16333574 (+)
G41536 NA non-coding downstream 458531 16583402 ~ 16583699 (+)
G41537 NA non-coding downstream 498549 16623420 ~ 16623650 (+)
G41564 NA non-coding downstream 605196 16730067 ~ 16731293 (+)
G41565 NA non-coding downstream 608033 16732904 ~ 16733177 (+)
G41264 hbp1,LOC108230206,LOC107701066 other upstream 303101 15477179 ~ 15818342 (+)
AMCG00012987 NA other upstream 329816 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 490440 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 547975 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 551500 15566493 ~ 15569943 (+)
AMCG00013015 NA other downstream 594484 16719355 ~ 16729533 (+)
AMCG00013047 NA other downstream 2033971 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 2842558 18967429 ~ 18974362 (+)
G41978 NA other downstream 2900690 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 5144804 21269675 ~ 21278728 (+)

Expression


Co-expression Network