G41518


Basic Information

Item Value
gene id G41518
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16333231 ~ 16333595 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU51729
caaggaaggaaaagtggtgaaccggcgacagggtcatgggcggccaaggctcattgatgcacgtggggagtgaaggctggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcacctacaatgggcacgtgagcatcagaactggaccacggagcaatggaggaaggcggcctggtctgatgaatcacgagttcaaggtgttgacttgacctccaaattcc

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51729 True 365 lncRNA 0.55 1 16333231 16333595

Neighbor

gene id symbol gene type direction distance location
AMCG00013007 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947 coding downstream 82021 16250137 ~ 16251210 (-)
AMCG00013003 NA coding downstream 178376 16146243 ~ 16154855 (-)
AMCG00013001 NA coding downstream 204998 16108615 ~ 16128233 (-)
AMCG00013004 NA coding downstream 228812 16100316 ~ 16104419 (-)
AMCG00013002 NA coding downstream 247990 16081261 ~ 16085241 (-)
AMCG00013008 LOC101481179,LOC102780800,LOC107388280,LOC103369862,LOC107743796,LOC107577513,LOC107691210 coding upstream 199155 16532750 ~ 16533847 (-)
AMCG00013012 NA coding upstream 344565 16678160 ~ 16687304 (-)
AMCG00013011 NA coding upstream 382921 16716516 ~ 16718657 (-)
AMCG00013014 LOC107666920,LOC107706881,LOC107669499 coding upstream 399334 16732929 ~ 16735796 (-)
AMCG00013013 NA coding upstream 422792 16756387 ~ 16768362 (-)
G41510 NA non-coding downstream 115636 16217381 ~ 16217595 (-)
G41506 NA non-coding downstream 125054 16169309 ~ 16208177 (-)
G41460 NA non-coding downstream 297295 16035647 ~ 16035936 (-)
G41455 NA non-coding downstream 317210 16014136 ~ 16016021 (-)
G41454 NA non-coding downstream 321867 16011012 ~ 16011364 (-)
G41538 NA non-coding upstream 289824 16623419 ~ 16623773 (-)
G41612 NA non-coding upstream 813120 17146715 ~ 17146981 (-)
G41627 NA non-coding upstream 968548 17302143 ~ 17302892 (-)
G41647 NA non-coding upstream 1143267 17476862 ~ 17477270 (-)
G41648 NA non-coding upstream 1144220 17477815 ~ 17479389 (-)
AMCG00012985 NA other downstream 610774 15719513 ~ 15722457 (-)
AMCG00012931 snrpf other downstream 1988759 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 3217744 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 3426898 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 4061442 12240396 ~ 12271789 (-)
AMCG00013018 NA other upstream 296636 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 1546630 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 1596303 17929898 ~ 18046714 (-)
G41807 NA other upstream 1842466 18176061 ~ 18191522 (-)
G41836 NA other upstream 1909155 18242750 ~ 18244093 (-)

Expression


Co-expression Network