G41564


Basic Information

Item Value
gene id G41564
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16730067 ~ 16731293 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU51781
aaaaaaacctcCTAAAGCACCATTTTATACAGGCAGAAAAGGAAACTggtcataattattttaaatcagtgtgTCTAAAATAACATGTAATATGTTGTgccttgtactgcactatatttttgcactttgtattgcgcttatattttgtaagtcgccttggataagggcatctgctaagaaataaataataataataaataacaatctacatttgaaaaataaataacaggaacTTAAAGTGTAACAGGCATGATtcataaaatcaatcaatcaatcagtttttatttgtatagcgcccttcgcagggtagccacagagcgctttacagactggtaaacatacaacaaacgtacaatacataaatacaataaaattaaatatagacctgtaaacatcttacatgatctagaataaagtgagtgatcatttaagtaaataaaccaattaggcatggaggagagaaaaacaaaaaaactcctatggatggcatgtaggagaaaatgaatctctgggggtccacggcttagggcctaggcctaatggttgcctcccctccaggcagtatagttattacagcagcaagaagatcagaaaaatcttgatcggtgctgctggctgtgctcttccctctggaggaggcctctcgctggccatcgggggtggagggtttggaccatcaacaggctttgggttgcgatggctcgtcacaccttgggtgtggatgccccgttgaccctccgtggtgaggtgcctctggggtgggttgtgcctcatcagacttccttGGTGGGGGAcaaggtgcctcgttggaccctcagaggaggctgctgctggaagacaagaaggcagtcgtgctcagatactggtcatgcagtgcaggacatttccaaagacagctGTGCAATTGCAtttccatggcacaccggcggcactatgggctagaaaaacagagactaaacagatgagtcttcagacatgatttaaaggctaagacagagatctcttacattggctggaagatcgttccacagcttcggggccctataactgaatgctctaccacctgcggttttcttgtgtattttagggagcgctatgtaaccggcttcctgtgatctcaatggccgacctggagtgtattcgataaggaggtgccagtcccttaagtgctttaaatgttaataagagcaattaaaagtctatcctgtagcgcacaggcagccagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51781 True 1227 lncRNA 0.44 1 16730067 16731293

Neighbor

gene id symbol gene type direction distance location
AMCG00013010 NA coding upstream 20056 16708272 ~ 16710011 (+)
AMCG00013017 NA coding upstream 52736 16642916 ~ 16677331 (+)
AMCG00013009 NA coding upstream 292206 16436064 ~ 16437861 (+)
AMCG00013006 NA coding upstream 546647 16155679 ~ 16183420 (+)
AMCG00013005 NA coding upstream 584642 16137999 ~ 16145425 (+)
AMCG00013016 NA coding downstream 15877 16747170 ~ 16757092 (+)
AMCG00013023 kctd2,LOC107727321,LOC107666921,LOC107582756,LOC103398851 coding downstream 738313 17469606 ~ 17476756 (+)
AMCG00013032 NA coding downstream 777994 17509287 ~ 17517737 (+)
AMCG00013029 NA coding downstream 802552 17533845 ~ 17557349 (+)
AMCG00013031 NA coding downstream 831437 17562730 ~ 17563944 (+)
G41537 NA non-coding upstream 106417 16623420 ~ 16623650 (+)
G41536 NA non-coding upstream 146368 16583402 ~ 16583699 (+)
G41517 NA non-coding upstream 396493 16333290 ~ 16333574 (+)
G41484 NA non-coding upstream 605196 16121443 ~ 16124871 (+)
G41469 NA non-coding upstream 655968 16073514 ~ 16074099 (+)
G41565 NA non-coding downstream 1611 16732904 ~ 16733177 (+)
G41566 NA non-coding downstream 4069 16735362 ~ 16735848 (+)
G41577 NA non-coding downstream 42056 16773349 ~ 16776045 (+)
G41611 NA non-coding downstream 415422 17146715 ~ 17146976 (+)
G41638 NA non-coding downstream 733608 17464901 ~ 17466059 (+)
AMCG00013015 NA other upstream 534 16719355 ~ 16729533 (+)
G41264 hbp1,LOC108230206,LOC107701066 other upstream 911725 15477179 ~ 15818342 (+)
AMCG00012987 NA other upstream 938440 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 1099064 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 1156599 15570906 ~ 15573468 (+)
AMCG00013047 NA other downstream 1427549 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 2236136 18967429 ~ 18974362 (+)
G41978 NA other downstream 2294268 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 4538382 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 4554738 21286031 ~ 21471560 (+)

Expression


Co-expression Network