G41743


Basic Information

Item Value
gene id G41743
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17929935 ~ 18013678 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52009
acatgatctgcctcatctaaacccatgttgactatctccaagaatatggttttcattaagatgctcctctattttctgtctaatcattttttccaacattttatgcagtgatgcaggtgagactgattggtctgtaatatTCTTCTTTAAAGTAACTTATTAAATACTATGACAGTCTATTTTAGCAGGATACATTTACCACTCACTTGTACTGACTAATATAGCACAGTGTCATAAGGTAAAGACTCAAGCCTGCATTACTTTGAGTCCAAGGCATGTCAAgactacaaaaaagaaaaaaattgaaactttGCCCTGATTGCAttaaatcattatatatttagtatGCTTCTGAAACATCTCAATAATGCCACAATACCAGTCTCCTAAGAGCCATGAAATTTGTCTGGAATGTACTGAAAATATGtactgatttgtgttttttttgacAACATAGTCTGTCCCTTTTAATGACCTTTCCataaagaatatgtttttttgaagCCAACTGTGGCCCCTGTCAATTTCTGTAATTGGGCTTGAGGTGTGGAGCGTTACTCTGTCTAATGTGAAGTTTATGTTGACTGATACAAGTCTCTGCTATGTTCGTGCACCAGACATGCAGTAACAGTGTTATAATTGATGATGACTGGGTATGTTAATTAGATGTTCCGACATACTGTTGACCACCCTCTGTATTTACAGTAGAGAATAAAATGCCCTGTACAATAAACTCTCCACGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52009 True 744 lncRNA 0.36 2 17929935 18013678

Neighbor

gene id symbol gene type direction distance location
AMCG00013041 NA coding upstream 40168 17866214 ~ 17889767 (+)
AMCG00013040 NA coding upstream 77039 17848756 ~ 17852896 (+)
AMCG00013035 NA coding upstream 241295 17657119 ~ 17688640 (+)
AMCG00013030 NA coding upstream 291239 17601378 ~ 17638696 (+)
AMCG00013033 NA coding upstream 338234 17583125 ~ 17591701 (+)
AMCG00013045 NA coding downstream 137774 18151452 ~ 18154122 (+)
AMCG00013046 NA coding downstream 241767 18255445 ~ 18258332 (+)
AMCG00013053 mfsd11,mfs11 coding downstream 252590 18266268 ~ 18280801 (+)
AMCG00013052 NA coding downstream 319047 18332725 ~ 18351553 (+)
AMCG00013054 NA coding downstream 345877 18359555 ~ 18362887 (+)
G41683 NA non-coding upstream 352179 17577445 ~ 17577756 (+)
G41649 NA non-coding upstream 443253 17480579 ~ 17486682 (+)
G41638 NA non-coding upstream 463876 17464901 ~ 17466059 (+)
G41611 NA non-coding upstream 782959 17146715 ~ 17146976 (+)
G41577 NA non-coding upstream 1153890 16773349 ~ 16776045 (+)
G41810 NA non-coding downstream 226314 18239992 ~ 18240369 (+)
G41812 NA non-coding downstream 226790 18240468 ~ 18242583 (+)
G41814 NA non-coding downstream 229105 18242783 ~ 18244143 (+)
G41818 srsf2,srsf2b,LOC105012916,LOC108430244,LOC106612293 non-coding downstream 248285 18261963 ~ 18265695 (+)
G41821 NA non-coding downstream 269950 18283628 ~ 18284855 (+)
AMCG00013015 NA other upstream 1200402 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 2138308 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 2298932 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 2356467 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 2359992 15566493 ~ 15569943 (+)
AMCG00013047 NA other downstream 145164 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 953751 18967429 ~ 18974362 (+)
G41978 NA other downstream 1011883 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 3255997 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 3272353 21286031 ~ 21471560 (+)

Expression


Co-expression Network