G41818 (srsf2,srsf2b,LOC105012916,LOC108430244,LOC106612293)


Basic Information

Item Value
gene id G41818
gene name srsf2,srsf2b,LOC105012916,LOC108430244,LOC106612293
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18261963 ~ 18265695 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52112
aaaaaaaaaaactttaatagcATTCACATAACAGTGGTTATAAGTACAGAATGTTTAAAGCGAAAGAATTGCAAAGGAATGCACCAAGAGCGATCTACAGAATGCAATTACATTCTCAGTTTAACAGAAGTTACAATTACTGAAAACCCATAAGGTGTGTATAAGAACGGCAAGATGTGCTCACTGTATGctccaattaaaaaagaaaaagaaaaacatgtaattgtgtGGCCTTCATGTCAGGAAATGCAGCAGACCGGcattttacaaaaggaaaatctGCGGCAGCCATTTTATGCATCGGCACGCCAAGGCATCGTTACACAGGAGCAATCAGGAGAAAACTGGAAACAGCCAAGCACTCTGCACTGCAACACGCCACCTTAACAGCTAACCAGCAATACTCAACTGCTACACAACTGCGCCTAGtgcacaaaaaatacacaagagAAAAGATTAGAATCACAATAAGATGAAACtgtcatttacaaaaaaaaaacttgcaagtaaatgaaaacaaaatcagtgcTGGGTCagcctttttaaatgttagcTTAACAGGGCTAATCGTAAATTTAAActggttttattaaaaaaaaaaaaaaaaaaaaaaaaagttagtcaAGCACTTGTTCCAGATTACTAGTcctttattgcatttaatttaaattctgccCTAAAATACCCTGCCGAGTTTAGCACATTTCATTTCTGTATATGAACCAATTGAAATTTTGCAATGTCAAAACTTGCAATTTCCAGACCATTTTATATACTCTGGGCTATACTTCCAATTATAGTTTGATAAATCCCCCAAAATTGTAGGTGAaaattttacaaagaaaaaattcTATACaaaatggaggaaaacaaaaccctcAGCACCACATCatgttaaaacagaaaaacaatttgCTTTACCTCACTTACACAAGCCCATAAAGTATCTGAAGTTCTTCCTATTCAATGAATTACAAGAAATTGGAAAAGatggcacaaaataaaaatcagcctTATTTTCTAGGCAActtaaatcaaaagaaaagcatttaaaaacctTGGGACTAAGTTACAATAATAACCTTTTAGCCAGCAAATTTCTcttgtgggggggaggggggggtgtgtgtgtgtggtcctCAGTCTTTGAGGCCTATACTTTCGACGGGGTGTCCTCAGTTGGGTCTGTCACTCATCTGAAAAATctagagagtgagagagagaagagcgTGAGCAAAAGACAACAGCAATAGAAAAGCCTCCAGCTAAGCTACCTTTATTTTGATGCATTAAAAGTTACTAATGTACAATATACAAGTTAAAATGCTCTTAGGGCCCAAGATACATTGACAAAAAGAGGCAAAAGACTGAAAGCTTGAATTACCTCCATGTGCACAAATGAGCGATTAGTCATGCCACATGTGGTATAAACTACATCTAACTGGGATTTCCTGCAAAATGCATTAATGACAATTGTCATGGTGTCAAACTGTCACAAGCAATCCTACATTTGTAGGATAGATGACGAGGGCAGTCTTAAAAGACAGGATTTGTAGCTCCTTATGTAATCTCCTTTATGGGGAGTTACATGAAGAGCTTGCCATTGGAAAGAGCATGGGGGTTGATATAACAGCTAAATTAGTTTGAAGAAGTCCTAGTGCTACCTTTAAGGCACACAAGAACTCTTCATTTGACCTATTATTCATCCCTGACATGAACAAGTAGGCAGACAAaccttttttctctcctgcttTATTCTGTGAGCCCACAGTCATGAGCGCATGACCTGGAGGACAATGCAAGGCTTCTGTCCATTGTCCTGCAGACGTACCTCAACACCACCTCATTACTGACTGTGACCGACCTGCTCCAAAGCATACCCCAACAGCAGGAGGCGGCCCCTGGGCGGATCACACAACCTCTAACTGCACAAACTGCCCCAAACTCCTTTTTTGCAAACAGGAAACAGCAGCTTGGAGGAGAAAATTCCACATTTTTGGTGAATATTTTACTTCCGAACCAGTCTTTATACTGCAAAATATCACTCCTGCAATTAACaatttccccctccccccactagTCTTCTGAAATGGAACACTTTCAAACCTCAAATTTACATCAGACCTGATGTAAATTCCATTATATCCCAAagtctaatttaaaaacactaaagTTGCTATAATCAGCTTTTCTCCAACCTGTTGCTCACTGGGCAAACAGCCATCCGATCAACCCTGCATCAATCTCGGGAGGAAACAAACGGCCCGATTCCACAAGTTACTTGTCAGTTCAATTTCCGTTGCGTAACTATGAAAAATACTTGAGTGCAAAAGGTTGGAGAGGTTTGCTGCAAGTTGTGACTGTCAGTCATgcttaaaacattaaagttttGCCAATGCTACGCCCTTTCATCATGCTACTTACTGAGCGTGGAACATTTGTTAATGCTGATCCTTCACTATAATTAAAACTCAAACATCCCCTCCTGGCTGTGCCGGCGGGAGTCCCGCAGCAGTATTTACCGTGCATTCACGAAGACACCGCGCCTTCCTCCTCCGGGGACTTGGGGAGACTCTTCGACCTCGATCTGGACTTGGACTCTCTGTTGGAGGGCGGCGTGCGGCTTCTGGACCGGGAGCGGGACTTCGACCTGGAGCGGGACCTGGACACAGACTTGGACTTGCTCCTTCTGGGGGTCCTGGACTTGGAACGGGAGCGGGACCGGGAGTAGGAGCGGGACCTCGACCTGCTGTAGCGGGAACGGCTGCGGGACCTGGATCGGCTCCGGCTCCTAGAGCGGCTGCGTCGTCGTCGTCGAGGACTCCGGGGGACGCCCGTAGCGGGCCATCTGCACCCTCAGTTCCCGCCCGTCCAGCACAGCTCCGTCCATGGCATCCATCGCGTCTTCGGCATCCCGCTTGTCGTGGAAGCGAACAAAGGCGAACCCTCGGCTCTCCTTCGTGTACCGGTCACGGGGGATGTACACGTCTCCGACGCGGCCGTACTTCTCGAAGACCCTCCGCAGCGTCTCTGGCGATGTCCGATAAGTCAAGTTGTCCACTTTGAGTGAAGTCATGCCCTCAACATCGGGTGGCGGCCTACCGTAACTCATTTTCTCGTCAGACGGTgtaaaccaaacaaagaaaaaataaaacttcaacTATCAGTAAATCTCagaatgtttaattaatctaCTAAGCAATCCCTTCACTCTagttacttaatttaaattttaattacatacacAGTATAACATTCTAAATGCACGCTGCGCACAAATCAACAATGCAGCACACGGCTGCCTCTCCA

Function

symbol description
srsf2b Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nuclear speck. Human ortholog(s) of this gene implicated in acute myeloid leukemia and myelodysplastic syndrome. Orthologous to human SRSF2 (serine and arginine rich splicing factor 2).
srsf2 Enables RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of alternative mRNA splicing, via spliceosome. Located in cytosol and nuclear speck. Implicated in acute myeloid leukemia and myelodysplastic syndrome. Biomarker of clear cell renal cell carcinoma and pulmonary neuroendocrine tumor.

NR:

description
Splicing factor, arginine/serine-rich 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52112 True 3309 lncRNA 0.43 2 18261963 18265695

Neighbor

gene id symbol gene type direction distance location
AMCG00013046 NA coding upstream 3631 18255445 ~ 18258332 (+)
AMCG00013045 NA coding upstream 107841 18151452 ~ 18154122 (+)
AMCG00013041 NA coding upstream 372196 17866214 ~ 17889767 (+)
AMCG00013040 NA coding upstream 409067 17848756 ~ 17852896 (+)
AMCG00013035 NA coding upstream 573323 17657119 ~ 17688640 (+)
AMCG00013053 mfsd11,mfs11 coding downstream 573 18266268 ~ 18280801 (+)
AMCG00013052 NA coding downstream 67030 18332725 ~ 18351553 (+)
AMCG00013054 NA coding downstream 93860 18359555 ~ 18362887 (+)
AMCG00013057 NA coding downstream 123116 18388811 ~ 18396122 (+)
AMCG00013056 NA coding downstream 141016 18406711 ~ 18433678 (+)
G41814 NA non-coding upstream 17820 18242783 ~ 18244143 (+)
G41812 NA non-coding upstream 19380 18240468 ~ 18242583 (+)
G41810 NA non-coding upstream 21594 18239992 ~ 18240369 (+)
G41744 NA non-coding upstream 243450 18003948 ~ 18018513 (+)
G41743 NA non-coding upstream 248285 17929935 ~ 18013678 (+)
G41821 NA non-coding downstream 17933 18283628 ~ 18284855 (+)
G41822 NA non-coding downstream 29950 18295645 ~ 18295946 (+)
G41823 LOC107575789,LOC100846954 non-coding downstream 32930 18298625 ~ 18298914 (+)
G41908 NA non-coding downstream 394559 18660254 ~ 18660522 (+)
G41924 NA non-coding downstream 431125 18696820 ~ 18697632 (+)
AMCG00013047 NA other upstream 31725 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 1532430 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 2470336 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 2630960 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 2688495 15570906 ~ 15573468 (+)
AMCG00013068 NA other downstream 701734 18967429 ~ 18974362 (+)
G41978 NA other downstream 759866 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 3003980 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 3020336 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 3105148 21370843 ~ 21421316 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G266647 NA non-coding CI01000063 null 7511936 ~ 7515695 (-)
grasscarp (Ctenopharyngodon idella) G292565 NA non-coding CI01000080 null 3173977 ~ 3174258 (-)