G41850



Basic Information


Item Value
gene id G41850
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18285551 ~ 18285996 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU52150
tttgctTGGAGATTGTAGAACCTgcctctgaaataactggaaaagtcattGAGATAGCAattagaactttaatcaagccggcttggaagcaccacggcaaggaaattccttcagtgagaacttaatgtttacaaacatgagtgcagctttataggaaaattatgtagaatcttgtggccgttcatccaatcaaaggcttcaaaagatgcaagctctgggaagtttgtaggctgcccttcccaagggaggaggtcatcatggaggcagatgtctggtcctgttacagcatacaaacggtacgatcttgtggttttcttaacaacgaggtaacatctttagctttgagaggagaaacaggaaatccacatacagacaAATCCATGGGTGGATACATTTGGAAAAccccatgggcgatacattcagacaaacccatttctcttatcata

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU52150 True 446 lncRNA 0.42 1 18285551 18285996

Neighbor


gene id symbol gene type direction distance location
AMCG00013050 srsf2,srsf2b,LOC105012916,LOC108430244 coding downstream 20053 18265139 ~ 18265498 (-)
AMCG00013048 jmjd6,LOC107654591 coding downstream 30202 18244195 ~ 18255349 (-)
AMCG00013049 NA coding downstream 46396 18194012 ~ 18239155 (-)
AMCG00013044 NA coding downstream 136373 18139575 ~ 18149178 (-)
AMCG00013043 NA coding downstream 177155 18089693 ~ 18108396 (-)
AMCG00013055 NA coding upstream 6174 18292170 ~ 18293312 (-)
AMCG00013063 NA coding upstream 272952 18558948 ~ 18564943 (-)
AMCG00013065 NA coding upstream 486629 18772625 ~ 18788291 (-)
AMCG00013066 grin2c,LOC105022923 coding upstream 519016 18805012 ~ 18820165 (-)
AMCG00013067 NA coding upstream 632568 18918564 ~ 18926388 (-)
G41849 NA non-coding downstream 1020 18283628 ~ 18284531 (-)
G41848 NA non-coding downstream 2921 18279560 ~ 18282630 (-)
G41839 NA non-coding downstream 26145 18259127 ~ 18259406 (-)
G41813 NA non-coding downstream 43016 18240468 ~ 18242535 (-)
G41811 NA non-coding downstream 45182 18239965 ~ 18240369 (-)
G41851 NA non-coding upstream 9649 18295645 ~ 18295946 (-)
G41858 NA non-coding upstream 45814 18331810 ~ 18386206 (-)
G41875 NA non-coding upstream 143058 18429054 ~ 18433717 (-)
G41922 NA non-coding upstream 374258 18660254 ~ 18660522 (-)
G41925 NA non-coding upstream 410824 18696820 ~ 18697607 (-)
AMCG00013051 NA other downstream 20708 18258089 ~ 18264843 (-)
G41836 NA other downstream 41458 18242750 ~ 18244093 (-)
G41807 NA other downstream 94029 18176061 ~ 18191522 (-)
AMCG00013042 NA other downstream 238837 17929898 ~ 18046714 (-)
AMCG00013038 NA other downstream 375534 17880225 ~ 17910017 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other upstream 691064 18977060 ~ 19022778 (-)
AMCG00013070 NA other upstream 782249 19068245 ~ 19071418 (-)
G42076 NA other upstream 1694340 19980336 ~ 19982880 (-)
AMCG00013090 NA other upstream 2245198 20531194 ~ 20545811 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 2966111 21252107 ~ 21301421 (-)

Expression



Co-expression Network