G41875


Basic Information

Item Value
gene id G41875
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18429054 ~ 18433717 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52190
TTGgaatttttaaaaagttgtttattgttgtttgtttgtttttgttttttaaaaaacagaactcCGTTAAAGTCCTCGTTACAGAGGTTTAACCCTTTCCTTACATCCACAGAtgttcattttgttcatttttgtttgccCATTTTTATGTATGCTGTCTTTAGCTTTGGAGTTATGCAGAACAAGGGGTTACAAAGGAGTCCTACCGGTAAAGAAAGGGTTAAATAAATCCGTAGTGCAAATGTACACAAGAAAAGTCCGAAGTGGAGGTATTGACATGTCTGAACTTCGCTACTCTAAGGTGCTCGCTACAAGAGACTTTCAAACATGCACCCTTTTGTTTCGTGGTCCAGCAGGTCCTGCTTCTAAACAGTGCATTCATTATCCCTTTTtaggttttcattattttacatatttcccAATATAACAGCTTAAACAGATAACACGTACATGTAACACCAAATACCCACagttatgcaaaaaaaaaaaaaaaaaaaaaatcctagtattttattatgaatatggaTTATTTTCCATGGGTAGTTACAGAGAAAGGAAGGACATTTGACATGGAGCGGCACGGAAAGATTGTGCCACTGATTTGTGGTTACAGGACTGAGCTGAAGGGAAATGAATTTGAGTGGGGAttcccaaaccagtcctggaaAAAACCCTGCCCTGTCAGTTTTTATTCCAACCGAGCTTAAataattgagccttatattgcattgttagttcaattaaggattcaattaagcaataaagacctcaattggaacaaaaaaaaaaaaaaaaacacaggaaagcGGGTCCACCAGGACCGTTTTGGGAATCCCTTGATTATAGTAGAGGTAACCGTTGCTAACCTGTTTTATGGTATTTAAGCAGGTAGAAGTACCAGGGGTTTGGAATGAGGTCCATGTGTGGAGTGGATTGTTTGTGgtccccaaaacaaaacagttaaacaCTGCTCACATAAGGCTGAGGATTCGATATTTTAGTAATACTTTAGTAACACTTTCAACAAAATAAGTCACTTTGTATCACCCTGTACAATGAACAGTGCACACTCATGTGAGAGGCAAATTCCCCAGGTCGCGAAATAACCCCAATGCACACCAAAAACATTTACGATTTCCAAGAAGTTCTGGGGTTCAAATTCCACTTGGACAAGTGTTTTTGAGATGTGTGTTGAATGAAGCATCCGAATGATGACAGAaacaatttacatattcattaagaaatatagaaagaaaatgttaattggAATTTAACTGTGATTTTGTCAATTAATTTGCCTGTCCTAAACATGATTCATACTGAGCTCTGCTTGAAATAAGGTATCTGCATTCCTTTGTGTTGTACAGAGGCATTTAAAGGGTTTAACATTTTGTCTGGCATATCGACATTATTTTTGCTCTTGCCCAAAGCATTTTGCCAGGTGCATTTTGGGTTTAACAAACCACCCCACCACCCTCAGCACACTGCATATGAGCTGCACTTCTGCAAAAAAGCAGTTTGAAGATTTCACCTTTTGCAGAAACAGTATATAAAGCTCAGATTATGCCAATAAGAAATGGGTACATATCTTGTCCAGTGCATTAGATTCACTACAACCAACCCAAGTAACTCCCATTTCATTTAACTGATCAGTAATAATTATTGCTACTTGTGGTGGATTGACTGTCAGATAACACTCCCTGTTCACACAAGCGCCAAATTTGAATAAACAAGAGCCTACTTGATTTTCCGTTGCTTGGTCCCTGCAACTTATATAAATtgattattatacaatattatcTCTGAATATGCCCCCTATTTCACTACCTGTGAAAATGCAACAGGATCACTGCAGGACTTCAAAATGCCGCTGTACAGCCAAACAAGCAAGTAGAAAGACATACACAATGCAGGAGAATTTGAAAATAGTAACAGGTTTTCCATCAGAAAACTGGAATTCTCGTTTTAAGTAGCTCCATACTAGCATAGTCTGCATCAAACTTAATTGCCTTACACAAAgacctaaaaaaaacaaaaacaaaaaaacactcactacaaaaatgtgaaattattaacCAAATGCAAGTGAGTGAGAATGCAGATTTGGATAATGTGCTTGTATGTCAGAGTGGGTTTAGTTATTTGTTGAGGATATATATGGTTTTCCTGTTAAAATCATTCCAGTGTCACTAGATGACATGCATCATTTTATTGTGATTGACAGAGATATGAGAAATAAGGTTGTttcttttatatacatatatagatagatatatacatgGCATGCAGGGCTGTATAGTTGCAGCTCATTAGGAGGGGAAGTCTGTGGGTTTTAATGGGGCAGATACAACCCTCCAGACAGGTCAGCACAGACAAAATTGAATGGTGGAGAGACAGACATTTTATTGCTTTAGTGTTTTCCTTTGTGAAGCGCTTTTGGAATCTCACCAGCAACGGCCTGGTATAAAAAAAAGTGGACACCCAAAGAGCACAAGGAAGCCCTCAATCACTTGGACAGAACGCAAAAACTGTGAGGTGTCGAGGAGGAATTGACCATTGCAAAGTTAAAGTGAGCCCAGTTCAAGTAAAGACattgtagtttgtgtgtgtgtatgtgtgtgtgttatttatcttaaataaatgacaaccTTTTAAGTTCTCTAGGCAACATACATTCTCATCCTTGTTTTAAAGACTTAAGTTACATTCCAGGGCTTCGGACAaattatgcttttgtttattatggAATGTTTTTCGGTGTATGCCTTACACAACCTCATTGCTTCTGAAGAGGGCCTGTTTGAAACTACAAGGGGTTTACATAATCAGAATGCCATCACTGTTGCTTGTCAGTTCCATCTCAACAAAGAGTGGAAGTGTGGACTACaagcaaaaatattttcaaaatgtgtcactAGCATGGGGGCTAGATGAgtttcttcctttcatttattCAACTATTATTTCATTGACATTAATTAGCTAACAGTAAATAGCCTCACAAagtaacaatttacaaaagCAGCATCCTTATCGAGCTCATCTTCCTTCATTTACAACTGATGGACTTTTTAAGAAACTGAAGAATGTACATGTTATAGTGTTAAATCAACTGTATTACTCcaaatgaatgagaaattaaactaCATATGCTAAGCTATaacaaagatacatttaaattaaaaaagcaatgcagCAAAATTGGCCCATTGGAAACAAATTGGCCTGAGTGTAACGAAACAGAAATCTCCCTGGTAAACTCAAAATCAAGTACTAGTACAACTAAGTGCATTCACAATTCAAGAAAATCAAGAGAGTCTACAGACTAGCAcaagagcaaacaaacaaataaaaataaagatctcATGGTTTTGCTCCAGAAAGTGGGCAGGGATCTTTTGAGAATGCACTGCTTCTGCTGACCTTGGCAGGAATGGGTAGGCTGCTTCTCTGAGACGCACACCTTGCCAGGCCAAGCTGGTCCTCACAGTGTATATGTTAAAGTGAGCCCTACATCCCTTAAAACCACTTCCCCGTGTTCTGGAGACCTTGAAAAAACTACCAAGCACTACCAAGAAAATCAGCTGCAAGAAGCCTTGTATGTTGTCACAGCAGTGCACCTTACTGCTTTTATCCCAGAGTCTGTAGGGATTTCTAAAACCAAATGCCATATAAccctttaaattattattttttaaattgttttccatttatttggACCCCAGGCTAGTGACACTGCAAATGCTCAACCATGTATCTTTCTACTTGCAAATTAAccaatttattttgtgcatcatGCACAGAAACCCTACATACCTAAGTTGTGACTCAGAACTCCCACAGCACACCTAGGGAACTCAATGCTGCTGCTGTCCAGTGTTGGAATTCCATCAAGGTAATTCATTCACCCAAAATACAAAGTCTACAAGGAAGATTGAAACCTAATGGGTTGACTGAggaaacggaaaaaaaaaatgtagtagtGTAGCATTCTGTAGTCTCTTCCCATGTGGCTTAGCTGTAATACATTCACTGCTTTCATCAAGGCTGTGGGCAGCATGCTTGGCTTCAGGGAGAGTCTCACGATGAAAGATTGGCCTGCGCGGGCAAAGTTTTTAGGAAAGTTCAGCTGTGGATTTGGTGAAGATCCCCCCCATACAAAAAAGATAAGGAAGGGAAAGTCACCTTTTCACCGAAAGCTGGGTGGGGGGAGTTGAGGCAGGTGGTTAGGGGTTTCAAATCACTTTAGTCAGGCAAGGTGCATCACTTAGACCTGCAGGTCTTAGACCTGCTTATTTTGGGGAGACTTGGCAAACTTGCCCCCGAGAGCTACTGTCCATTAGGAAACAAGGGAGATGGTTGCAGCTGTAGTTGTCCTCCAGAAACTTGGAATTGTGGGAGGCAGGGGTCTTGTAAGTGATGCCAAGGTTCGGGGGTGGACCCCAGTGAGATTTGGGGCATCGAGAAAGTAGGGTGTACGTGAGTGGGGGGTATTAGTTGTTAAACAGCAAGAGGTCCACAGTGTCGTGGTTGGGGGGAGACaccctcttcctccccctcctcctccagggcaATGTTGCTAGTGGAGGCGTGGTGTTGTAGGAGCCCTCGCCCCAGCCTGTGGCCCCCTCTGAATACCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52190 True 4642 lncRNA 0.40 2 18429054 18433717

Neighbor

gene id symbol gene type direction distance location
AMCG00013055 NA coding downstream 135742 18292170 ~ 18293312 (-)
AMCG00013050 srsf2,srsf2b,LOC105012916,LOC108430244 coding downstream 163556 18265139 ~ 18265498 (-)
AMCG00013048 jmjd6,LOC107654591 coding downstream 173705 18244195 ~ 18255349 (-)
AMCG00013049 NA coding downstream 189899 18194012 ~ 18239155 (-)
AMCG00013044 NA coding downstream 279876 18139575 ~ 18149178 (-)
AMCG00013063 NA coding upstream 125231 18558948 ~ 18564943 (-)
AMCG00013065 NA coding upstream 338908 18772625 ~ 18788291 (-)
AMCG00013066 grin2c,LOC105022923 coding upstream 371295 18805012 ~ 18820165 (-)
AMCG00013067 NA coding upstream 484847 18918564 ~ 18926388 (-)
AMCG00013072 NA coding upstream 530142 18963859 ~ 18964335 (-)
G41858 NA non-coding downstream 42848 18331810 ~ 18386206 (-)
G41851 NA non-coding downstream 133108 18295645 ~ 18295946 (-)
G41850 NA non-coding downstream 143058 18285551 ~ 18285996 (-)
G41849 NA non-coding downstream 144523 18283628 ~ 18284531 (-)
G41848 NA non-coding downstream 146424 18279560 ~ 18282630 (-)
G41922 NA non-coding upstream 226537 18660254 ~ 18660522 (-)
G41925 NA non-coding upstream 263103 18696820 ~ 18697607 (-)
G42056 NA non-coding upstream 1250719 19684436 ~ 19684658 (-)
G42058 NA non-coding upstream 1342807 19776524 ~ 19776729 (-)
G42078 NA non-coding upstream 1552526 19986243 ~ 19987735 (-)
AMCG00013051 NA other downstream 164211 18258089 ~ 18264843 (-)
G41836 NA other downstream 184961 18242750 ~ 18244093 (-)
G41807 NA other downstream 237532 18176061 ~ 18191522 (-)
AMCG00013042 NA other downstream 382340 17929898 ~ 18046714 (-)
AMCG00013038 NA other downstream 519037 17880225 ~ 17910017 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other upstream 543343 18977060 ~ 19022778 (-)
AMCG00013070 NA other upstream 634528 19068245 ~ 19071418 (-)
G42076 NA other upstream 1546619 19980336 ~ 19982880 (-)
AMCG00013090 NA other upstream 2097477 20531194 ~ 20545811 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 2818390 21252107 ~ 21301421 (-)

Expression


Co-expression Network