G41978


Basic Information

Item Value
gene id G41978
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19025561 ~ 19029278 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52302
CGTTTTATTGTCCCATCAGTCAACCAGACATGGCGCAAAAACGTCTTTACTGAAGGGCTTCATTGATGAACTGCCTTTCCTCACACTCCAGTATTAAGGCTCAAAGGGCATTTACAACAAAGTCATAACACTGGCATAGAACAAATGTAACAGTAAGAGCTTTGCAGCATGTTCACAGCTCATACATAACAAGTAAATCACACAGTGAGGTGTGGGTTTTGTAAAGATGTACTGGACTGTGTTTCACAGGTAGTTGAGTTGTCAGCTCTGAAGACGGATGAACCTCGACAAGTCCCAACTCTGAAATGCATGACAAATACTGGAGGACAGAGTCTGACCAACTGGATTGGGCTCAGTTTGTCTCGCTCCTTAATGTAATCTAGGTATCATAGCTGGACCAGTTAAAAGATCTTATTGTTAGCGCAGAACCAAAACAGACTGACCACACGACATGGCCGTCTATTCCCATGTTCTACTACTGACCTGAACCGATGAGCCAGGAGTCAAATCATTAAGGCGCTGGTTAGAACATGGCCGTCAAATTAAAATCAGTCAAGACTCTTGTGTTTAGATTAACACTAAGTGGGACTTCTGGACCATCAAGTTTCATCCATCTCCACTGCGTAAAGAAAAAAGGATACCACCCCAGAAAAATGAATTTCACCCAGTTAGGACAGAATTGTATACAGATAAAGACCGTACAGAACTCATCCTTCATAGAACCACATTGAGGTAACACATTTTGTATCGCTTTCTTAGTCTTTTCATTTCCATTCCTAATAATATCTGGCAATCTGCTCAACAATAAAATTCATACCTAGTTTAAAACTGAAACCTACAGGTTCTGTATTTGTACTGGATTACAGTGAAATCTTGCCTTTTGGGTGTCAAGGACCTGGAGATTTTCTGTTCTGTACGTGTTGGTATGATGCAAGATGTGCAAGTGATTGTATGCTTTGCAGGCAAAAGTGCATATTGCATCTTCCAGAGCTTATACTTGAACGGGTCCTAAAAGTTCAGAACACAGAAGTGAACAGCCAATGTCAATATGCACTGGTGGTTTACCATCTCATACATTCCCCCAGAGTTAGATTACAGAACATTTAGAAAGCttatttatgtactgtatttgatctgtgaaatcagtgaaagaaaaagtaatggtttattttaatgccaAAGTACCTGGAGCTTTCTGTAATGATGTGATTTAAAGTCCAGAAAATTCCCAAGCCAGATATACCCACATCACCGCTTTGGAAGCAAGTTTTAAATGTAGTGGGAGATACGCAGGAATAGACACAATCTGATAGTAGGGTCACTGTGAAATAAAGAGGCCCAAATTGGAAGAATGATCTTAAATTAGAGAAACACTGTTGCTCtcagataaaaatataaaaatataaatacatatacatttgttttcttcaattttGTCCCCTCGTCAACGCAATCATTATGCCTATTTTTTTATGGCTCCATTAGTCATTTATGTGGCTTATGTGGAGAAAAAGGCCACTTTAATTCAAGGCAAGATTCAGGATACACAAGGATAAGGTGATCTCATTCATTTAACATTTCTTGCCAGTTTCTAGAAAGAATATGAATGAGAAAATTCTATGAACAGTATTTCACTGGGGCTCTTCATTTGCtccaatggaaaaaatatgtttttttatcaaGATTAACAGTGAAATCTCTAATGACAATAACTATTTAGATGAGGGGAAAATATTTCATCACGGGAATCACGTTTTAACAGTTGTTCAGATTTGAGGACAATTATAAATGTGCCGACCAGAATTACACGTTATCAGTCTTGGCTACATAAACTGTTTCAATATTAAGGGATTAGTGAAAATGGTGAGCCGGTGAAATATTTCTTCCTGTTGACCACAACAAAGTACTGTCtatacacaaatgcaaattcaaTTCCACACCCATTAAGCCACATTAAATCAAGGGACTCCCTTCTCACAAAGCAAAATAAGTTATGGGCTGGTGGAATAAACCACTCTATGTTTAGTATTTCTGTCAGGTCGCAATAGCACTAGATATGCAACTGTCgtattatttcagaaaacaagGATTTCACATCCAGTTATGACGAGTGAAGTCACACAGTTGATATTAGTCATTTGCAATAAGATGCCACCTAATCTCCAACACTAGCCCTGATGGGCTAGGTTTTTGGGATGCGTGGTAAGATAAAAGGCTGCCATGAAAGTGGGAAAGTGATATAGAGAACAGACCACTGCCGCACAAATCAAACCAACTGGCCTTTCGTCAATAAAGAGTTGGCTAGCACTTCTACTCTACTGCAACTGTAGGCACTTCCTCTGCGATACAATGCTAAAAGACTGAATTTCAATTGGTTGCATTCCTACTGAAGGctgacagaaaaagaaaaaacagaggaTGAGGAATAGTCTTTGAATAACTTATGAGCTAGTGCTATGCGAGAGCTGTGTTTCCCATCTCCAGTCCCAGAGCTGTCTTCCATCTCTCTTGCCGCACATCAGAGAGACTGCCGTGTGCATCCCAACAACTCCACTTTCAGCTGTCCACAGCGGGGCTTCAGTTGTGATTGTGGTCTTCAGTTCCATGTAGTCAGTGCTCCGAACAGCACTGGAGAGTTTTTAGCAGCACTTTGATGCAAACCTAAAGAGCGAGGCCTTCGCTCCAAGGAAACCGCCATCCATGACCTCTCTATGGaagctccccctcccccccaccaatCTTGATTTCCAGCGGTTACGCAGAGGCCGACCTCCAGCATTTTCTTCCAGTAAAGTGCACTTCATGCCGTCCATTTCTGAAGTTCTGCTAATGCTTTTGGAAATAACTGATAACGTAAACAAgcacaaccaaaataaaaacaaaaatacctcatgtaaacaaatacaaataaaatgaagggaACTCTGGGGTCCGGTTTTGACCATCTTTCTTCTGCTCATGGCCGAAACAAAAGTCGTGAGCAGACTTTTGTCATATTTCATAAAAAGtgttagaaaacaaataattcctTTTGCAGTTCAAACGTGAAGGCCTCAAATTCTAACTTGATTGTAAgatgtgccaaaaaaaaaataaaaaaaaatgaagaaccAAAAACATAacttagaaatatatatatacaaaataaatgttttttttgtgtgcaaaaatTCAAAATCTTTCCCAGCTTTCTTGATGGGGGCTTTGGTAACCACATTGCCCGAAACTCTGTCGGCCCCAGTCTCTCAAAATCCTCTCCACTTTTGCCCATGCAACAGAACTTCCCCAGAACAGTCCTGCCCTGGCCCCAGTCCATATTCGCATGACTTGAAAGTGGCTCCGTCGTCTCCCCTGTGTTTTTGCACAGACTCGGGGGGGGCACAGGTGCTACCTGATGCGGCCATTGCTTTTGACTGGGCCCAGTTCGGCTTTGGGGTCGGGCGACAGGGAGCTCCAGCTGGACTTGGGGCAGAGTGTCAGGGAGGCGCAGGGCGAGGTGGCGGTGGAGCAGACGTCGCCCGTCACCCAGAAGGCTCCAATGCTGTCGTCCACCCAGTCCTCCAGGGCCCTGCCCTGCAGCAGGGCGTGGCGCCGGGCCTGCTCCATGGCCGAGTCGCCGCTGGGCAGCTTCAGGACCTGGCGCAGCTTGTGGAAGCTCTGCTCCATGTACTGGTTGCCAGGGGGCCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52302 True 3689 TUCP 0.42 2 19025561 19029278

Neighbor

gene id symbol gene type direction distance location
AMCG00013064 tmem104 coding upstream 332810 18691996 ~ 18692751 (+)
AMCG00013058 NA coding upstream 466280 18553253 ~ 18559281 (+)
AMCG00013062 NA coding upstream 511701 18512572 ~ 18513860 (+)
AMCG00013060 NA coding upstream 520589 18478697 ~ 18504972 (+)
AMCG00013059 NA coding upstream 553972 18462591 ~ 18471589 (+)
AMCG00013073 NA coding downstream 19206 19048484 ~ 19064539 (+)
AMCG00013074 NA coding downstream 42958 19072236 ~ 19077701 (+)
AMCG00013076 nme2b.1,LOC105913039,LOC107727143,LOC107573071 coding downstream 951262 19980540 ~ 19982853 (+)
AMCG00013081 spag9 coding downstream 978339 20007617 ~ 20007958 (+)
AMCG00013079 NA coding downstream 1004939 20034217 ~ 20080006 (+)
G41924 NA non-coding upstream 327929 18696820 ~ 18697632 (+)
G41908 NA non-coding upstream 365039 18660254 ~ 18660522 (+)
G41823 LOC107575789,LOC100846954 non-coding upstream 726647 18298625 ~ 18298914 (+)
G41822 NA non-coding upstream 729615 18295645 ~ 18295946 (+)
G41821 NA non-coding upstream 740706 18283628 ~ 18284855 (+)
G41990 NA non-coding downstream 37695 19066973 ~ 19068210 (+)
G42054 NA non-coding downstream 557250 19586528 ~ 19586793 (+)
G42077 NA non-coding downstream 956900 19986178 ~ 19987860 (+)
G42127 NA non-coding downstream 1358406 20387684 ~ 20392609 (+)
G42172 NA non-coding downstream 1521982 20551260 ~ 20551817 (+)
AMCG00013068 NA other upstream 51199 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 795323 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 2296028 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 3233934 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 3394558 15620735 ~ 15631003 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 2240397 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 2256753 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 2341565 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 2397382 21426660 ~ 21486808 (+)
G42453 NA other downstream 3213151 22242429 ~ 22245790 (+)

Expression


Co-expression Network