G42054


Basic Information

Item Value
gene id G42054
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19586528 ~ 19586793 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52389
cctccatgatgcgaaccctggaaaggaccttgatcttctcTTGCTCCTCCCGATAGAGGGCGGAGAGACTCAGTTTGACCCGGGCCACCTCCTCAGCTaggtcgaagcctctgagctgtaaaagaCTCAGGCGCTGGAGGCGGGCATTTAGATGAGAATATCTCGCCTGCCTCTTGCGAGCTTTCCGTTTCcccagctgaatgaagtagcccttggtccttttcttcaccatctcccaccactctatgggagaatcaaaaaggtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52389 True 266 lncRNA 0.54 1 19586528 19586793

Neighbor

gene id symbol gene type direction distance location
AMCG00013074 NA coding upstream 508827 19072236 ~ 19077701 (+)
AMCG00013073 NA coding upstream 521989 19048484 ~ 19064539 (+)
AMCG00013064 tmem104 coding upstream 893777 18691996 ~ 18692751 (+)
AMCG00013058 NA coding upstream 1027247 18553253 ~ 18559281 (+)
AMCG00013062 NA coding upstream 1072668 18512572 ~ 18513860 (+)
AMCG00013076 nme2b.1,LOC105913039,LOC107727143,LOC107573071 coding downstream 393747 19980540 ~ 19982853 (+)
AMCG00013081 spag9 coding downstream 420824 20007617 ~ 20007958 (+)
AMCG00013079 NA coding downstream 447424 20034217 ~ 20080006 (+)
AMCG00013082 LOC104949960,LOC107101812 coding downstream 670867 20257660 ~ 20258634 (+)
AMCG00013088 luc7l3 coding downstream 811816 20398609 ~ 20403101 (+)
G41990 NA non-coding upstream 518318 19066973 ~ 19068210 (+)
G41924 NA non-coding upstream 888896 18696820 ~ 18697632 (+)
G41908 NA non-coding upstream 926006 18660254 ~ 18660522 (+)
G41823 LOC107575789,LOC100846954 non-coding upstream 1287614 18298625 ~ 18298914 (+)
G41822 NA non-coding upstream 1290582 18295645 ~ 18295946 (+)
G42077 NA non-coding downstream 399385 19986178 ~ 19987860 (+)
G42127 NA non-coding downstream 800891 20387684 ~ 20392609 (+)
G42172 NA non-coding downstream 964467 20551260 ~ 20551817 (+)
G42177 NA non-coding downstream 1040301 20627094 ~ 20627334 (+)
G42269 NA non-coding downstream 1252796 20839589 ~ 20840560 (+)
G41978 NA other upstream 557250 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 612166 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 1356290 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 2856995 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 3794901 15782364 ~ 15791627 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 1682882 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 1699238 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 1784050 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 1839867 21426660 ~ 21486808 (+)
G42453 NA other downstream 2655636 22242429 ~ 22245790 (+)

Expression


Co-expression Network