G42076


Basic Information

Item Value
gene id G42076
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19980336 ~ 19982880 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52412
CTGGCATTAAATCAATGCTTACATTGTAAGTCAACATGTTTAAACATCCAACtgtgtaaaaatgtaacttAAGATTAGTCTTGAATGAGTAACAATGGAACTCAGACTgggttttatcattttattaagtGCTTTGCATTCAGAAGACTGACAGTACAAACTTTGCTCCCAGGTCTACATCCACTGGAATGAAAGGACACAGAAGGAAAGAGGACAGGCAGGGAGGGTGAGGAAACCGCTAAACTAGAGATTTATTCGTAGATCCAGTCGTGAGCAGGGCTCTTGTAGGAAACCAACTCCTCGGGTTTGAACCACAGGCTGATCTCGGTGTTGGCGCTTTCCACAGAGTCACTGCCGTGAATGATGTTTTCCAACCTGAATGCAGAAATCACCGCGGATGGTGCCAGGCTTTGAAGCAGCGGGGTCAGTCTCGCCCAGCATTACTCTGCCAGTCTTCACTACTTTAAGGCCTTCCCACACCTAAAATTAAAAGGAGAATTTAGCTtggtttaaattttaaaaagacaaaaggccCATCAAGAGTTATTTTGACTTGGTCATATTTACCATGGCAACAACAGGTCCAGAGTTCATGTACTTGACCAGTCCAGCGTAGAATGGTCTGTCCTTCAGGTCAATGTAGTGCTGTTTCAAGAGATCTTCAGATGCCTGTACACAAGAATTGAATTCAATTAatcccattaaaaataaaaaataatttgaggtGCAGTTTCACTCAATTGGAAGCATTTCTTCAGACACGTCTACTATATGCTTTGAGATTCTCATCAGGATTGATTGGTAAAAATAAAGACCAGTTGAAGTCATTTGGATTGCACATTTAAAGAGTGGCGTGGCATTTAACACACAGGCCTCAAGGAAGTACCCACAATacactggtttaaaaataaatccaatctGGGTGTTCCGTTCTATTCCTTGTCGGTCTGACAGCACTATATCAGGAAGTGCAAGCCACTTGTCCAGCAAGGCAATCAACCATAACACTTCTAAACAGGGAGTAGCCAAAAATAGACTACATTTACCAGGCTGGGAACCCTTAATCTCAGTTAAAACCAAACCAGGTTACCCCTATTCTTCCAATAAAAACATCCTTTGGAAAAGCACAATGaacattaaaaactgaactATGGCATTGCTTTACATTATGAAGTATTGCCCGATCTTGTAGATCAAGCCTAGTACTGGTATTGCGGTTTCTAAAACTACAGCCACAATACTCCAGATTAACAGTAACCAAGTTTTAAAAACGTGACCATGGCACAAttgcaaataaacacatgttAAGAGCTATAGTTAAGCACAGTGTGGGATGGAGCATTTCTGGTTGGAGAGATTATAGGGATACAAAAGCAGTTACGAAAATGGCAGATGGATAAATATGGGCCTGTAAGCCTTGTTTAATGGACAAaagtggagggggggggtaGGTAGGTTCATAATATCACATCAGAAGGATTGGCTACTATTTCACTCCAGAGAAGTCAAAGGTTTAGAGAAGCCAGGCAGTCCAGTCAGAAATCAGTTATTTTAAGCCTCTTAAGCCCAAGCACAGATTTATCCAGACATAAGCATGCGGGtggaagaggggagaggggggggcgGCAAAAGCAACAATACATACGTGCAGCATTTTCATTGCCACGAGTTTGAAGCCTTTCTGCTCAAAACGCTTGATGATTTCTCCAACAAGGCCTCTCTGCACGCCGTCGGGCTTGACCGCGATGAAGGTGCGCTCCTCGGCCATGGTGCTGAAACACAAAGACACGGGTATATACCAGCTGGACTTGAATCCGACTGCAAAAACACATGCACCAGGGGCTGAATCCTTACATTTCGAGTTGCCCCGGAGGAACACTTGGAAATCGTGGTCTGAATAACGCCCCCACCCCCATTGCGCAGACGGAGAGTCTCCGAGGCAGCCAGCCGGCCTGCGACTCGTTTGTATCCGGGCAGGGAGACGGGGCCGGCGGGTTATGTAATGCCGGTTACCTTAAGGTAAAAGTCCTCAATCCCTGCTATGCGAGTCCATTGCCGGCTCTGACAGACGGGCACCCGCAAGGCTCAGTCCGCCCCGCTCCCATAGTGGACGGCCGCGCAGAAGCTCATTCAAGCCGGGCAGGTGGTTATTATATTGCTGTAAAGACTGCAGATCTGCCATTACGAATGAAACGCGTCCGGTCCAGGACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52412 True 2213 TUCP 0.45 2 19980336 19982880

Neighbor

gene id symbol gene type direction distance location
AMCG00013077 NA coding downstream 2181 19963530 ~ 19978155 (-)
AMCG00013078 NA coding downstream 590215 19211843 ~ 19390121 (-)
AMCG00013075 LOC106589445 coding downstream 771332 19080736 ~ 19209004 (-)
AMCG00013069 NA coding downstream 934290 19025572 ~ 19046046 (-)
AMCG00013072 NA coding downstream 1016001 18963859 ~ 18964335 (-)
AMCG00013080 LOC107684067,LOC106607505,LOC107565795,LOC107702488,LOC106600809 coding upstream 5981 19988861 ~ 20005821 (-)
AMCG00013083 NA coding upstream 386266 20369146 ~ 20372204 (-)
AMCG00013085 NA coding upstream 410774 20393654 ~ 20397861 (-)
AMCG00013084 NA coding upstream 423677 20406557 ~ 20445394 (-)
AMCG00013095 NA coding upstream 567987 20550867 ~ 20578477 (-)
G42058 NA non-coding downstream 203607 19776524 ~ 19776729 (-)
G42056 NA non-coding downstream 295678 19684436 ~ 19684658 (-)
G41925 NA non-coding downstream 1282729 18696820 ~ 18697607 (-)
G41922 NA non-coding downstream 1319814 18660254 ~ 18660522 (-)
G41875 NA non-coding downstream 1546619 18429054 ~ 18433717 (-)
G42078 NA non-coding upstream 3363 19986243 ~ 19987735 (-)
G42136 NA non-coding upstream 418828 20401708 ~ 20405085 (-)
G42242 NA non-coding upstream 683465 20666345 ~ 20674228 (-)
G42278 NA non-coding upstream 906803 20889683 ~ 20890288 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding upstream 1211269 21194149 ~ 21195350 (-)
AMCG00013070 NA other downstream 908918 19068245 ~ 19071418 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 957558 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 1715493 18258089 ~ 18264843 (-)
G41836 NA other downstream 1736243 18242750 ~ 18244093 (-)
G41807 NA other downstream 1788814 18176061 ~ 18191522 (-)
AMCG00013090 NA other upstream 548314 20531194 ~ 20545811 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 1269227 21252107 ~ 21301421 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other upstream 1317213 21300093 ~ 21311306 (-)
G42371 myhc4,LOC108412647,LOC107723326,LOC108415768,LOC105910910 other upstream 1353337 21336217 ~ 21517177 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other upstream 1354187 21337067 ~ 21375763 (-)

Expression


Co-expression Network