G42172


Basic Information

Item Value
gene id G42172
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20551260 ~ 20551817 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52537
ggaaggggctgtttgagtgacacacacagcgGCCTGTAGGCAGCTTGGACAGAAAGAGGTTTCGATGAGGCTCCTATGGTAGCGAGTTAAACCCCCTCTTAGACAGAGCCTCCTCTCTCAGACCTATCGTTTCCAGCCAATGAAGATCAGAGTTCCAGTTCCTCCGAAGTGGAAGCAGGAAATGTCACCACAGAATGGCTTCGGCGTCTGAGgacagaagaggaggagaaagatcAAGCCGGCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52537 True 246 lncRNA 0.53 2 20551260 20551817

Neighbor

gene id symbol gene type direction distance location
AMCG00013089 NA coding upstream 16937 20523791 ~ 20534323 (+)
AMCG00013086 LOC106606937,LOC105022949,LOC106601506 coding upstream 37734 20512716 ~ 20513526 (+)
AMCG00013087 NA coding upstream 48919 20485023 ~ 20502341 (+)
AMCG00013088 luc7l3 coding upstream 148159 20398609 ~ 20403101 (+)
AMCG00013082 LOC104949960,LOC107101812 coding upstream 292626 20257660 ~ 20258634 (+)
AMCG00013092 NA coding downstream 6411 20558228 ~ 20565344 (+)
AMCG00013093 NA coding downstream 15330 20567147 ~ 20625298 (+)
AMCG00013091 bsk146,LOC103373441,LOC104933992 coding downstream 89875 20641692 ~ 20650263 (+)
AMCG00013099 NA coding downstream 209049 20760866 ~ 20768593 (+)
AMCG00013098 NA coding downstream 221411 20773228 ~ 20775301 (+)
G42127 NA non-coding upstream 158651 20387684 ~ 20392609 (+)
G42077 NA non-coding upstream 563400 19986178 ~ 19987860 (+)
G42054 NA non-coding upstream 964467 19586528 ~ 19586793 (+)
G41990 NA non-coding upstream 1483050 19066973 ~ 19068210 (+)
G41924 NA non-coding upstream 1853628 18696820 ~ 18697632 (+)
G42177 NA non-coding downstream 75277 20627094 ~ 20627334 (+)
G42269 NA non-coding downstream 287772 20839589 ~ 20840560 (+)
G42277 NA non-coding downstream 337858 20889675 ~ 20890332 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding downstream 704768 21256585 ~ 21304213 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding downstream 812287 21364104 ~ 21411989 (+)
G41978 NA other upstream 1521982 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 1576898 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 2321022 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 3821727 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 4759633 15782364 ~ 15791627 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 717858 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 734214 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 819026 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 874843 21426660 ~ 21486808 (+)
G42453 NA other downstream 1690612 22242429 ~ 22245790 (+)

Expression


Co-expression Network