G42177


Basic Information

Item Value
gene id G42177
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20627094 ~ 20627334 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52549
CACCACATTGTGTcgaagaagtgaaacaaataatGGTTTCCAAAACAACTTAACGGCAAGATTTACTAGTTATGCATTTTAAGGTGTTGAGTGCTAATGAACAAAAGTGTAGGCTAACGCAACAGGAGGACTAAGGGAGTGAGTATTACAATAAACGTGTTCAGTGGAATAATTTGGTGTTTATAAAAAACAAGCGTATTGtggtaaaataaacaatgtaaattacaCAATTGTTTCTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52549 True 241 lncRNA 0.34 1 20627094 20627334

Neighbor

gene id symbol gene type direction distance location
AMCG00013093 NA coding upstream 1796 20567147 ~ 20625298 (+)
AMCG00013092 NA coding upstream 61750 20558228 ~ 20565344 (+)
AMCG00013089 NA coding upstream 92771 20523791 ~ 20534323 (+)
AMCG00013086 LOC106606937,LOC105022949,LOC106601506 coding upstream 113568 20512716 ~ 20513526 (+)
AMCG00013087 NA coding upstream 124753 20485023 ~ 20502341 (+)
AMCG00013091 bsk146,LOC103373441,LOC104933992 coding downstream 14358 20641692 ~ 20650263 (+)
AMCG00013099 NA coding downstream 133532 20760866 ~ 20768593 (+)
AMCG00013098 NA coding downstream 145894 20773228 ~ 20775301 (+)
AMCG00013101 NA coding downstream 190187 20817521 ~ 20830999 (+)
AMCG00013100 NA coding downstream 333087 20960421 ~ 20980242 (+)
G42172 NA non-coding upstream 75277 20551260 ~ 20551817 (+)
G42127 NA non-coding upstream 234485 20387684 ~ 20392609 (+)
G42077 NA non-coding upstream 639234 19986178 ~ 19987860 (+)
G42054 NA non-coding upstream 1040301 19586528 ~ 19586793 (+)
G41990 NA non-coding upstream 1558884 19066973 ~ 19068210 (+)
G42269 NA non-coding downstream 212255 20839589 ~ 20840560 (+)
G42277 NA non-coding downstream 262341 20889675 ~ 20890332 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding downstream 629251 21256585 ~ 21304213 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding downstream 736770 21364104 ~ 21411989 (+)
G42345 LOC777982,LOC104957706 non-coding downstream 845382 21472716 ~ 21508824 (+)
G41978 NA other upstream 1597816 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 1652732 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 2396856 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 3897561 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 4835467 15782364 ~ 15791627 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 642341 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 658697 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 743509 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 799326 21426660 ~ 21486808 (+)
G42453 NA other downstream 1615095 22242429 ~ 22245790 (+)

Expression


Co-expression Network